BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929696
Length=968
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18220.1 | Symbols: | Phosphatidic acid phosphatase (PAP2) ... 1559 0.0
AT3G02600.1 | Symbols: LPP3, ATLPP3 | lipid phosphate phosphata... 99.0 8e-20
> AT3G18220.1 | Symbols: | Phosphatidic acid phosphatase (PAP2)
family protein | chr3:6247914-6249960 FORWARD LENGTH=1264
Length=1264
Score = 1559 bits (844), Expect = 0.0
Identities = 924/964 (96%), Gaps = 0/964 (0%)
Strand=Plus/Plus
Query 3 ATTTAATGAGCCTGGGAGATGGCTAAGATAATGCTTGGATCTCACTCGGTAAAGAGCCAT 62
||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 159 ATTTAATGAGCGTGAAAGATGGCTAAGATAATGCTTGGATCTCACTCGGTTAAGAGCCAT 218
Query 63 GGATGGAAGGTGGCTCGAGAACATCTTTGTGACTGGCTCATCCTCGTAGTCCTCGGTCTG 122
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 219 GGATGGAAGGTGGCTCGTGAACATCTTTGTGACTGGCTCATCCTCGTAGTCCTCGGTCTC 278
Query 123 ATCGACATTGTACTCAATGTTATCGAACCTTTTCATCGCTACATTGGACCAGACATGTTA 182
|||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 279 ATCGACATTGTACTCAATGTTATCGAGCCTTTTCATCGCTATATTGGACCTGACATGTTA 338
Query 183 ACCGATCTCACGTTCCCATTTTATGAAGACACCATCCCTATGTGGGCTGTCCCGATTATT 242
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 ACCGATCTCACTTTCCCATTTTATGAAGACACCATCCCTATGTGGGCTGTCCCGATTATT 398
Query 243 TGTATATTGGTTCCTATATGCATCTTCATAGTGTACTATTACTATCGAAGAGATGTTTAT 302
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 TGTATATTGGTTCCGATATGCATCTTCATAGTGTACTATTACTATCGAAGAGATGTTTAT 458
Query 303 GATCTTCATCACGCCATTCTCGGTATCGGATTCTCATGTCTTGTGACTGGAGTCACCACT 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 GATCTTCATCACGCCATTCTCGGTATCGGATTCTCATGTCTTGTGACTGGAGTCACCACT 518
Query 363 GATTCCATCAAAGACGCTGTTGGTAGGCCACGACCTAACTTCTTTTACCGATGTTTTCCC 422
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 519 GATTCCATCAAAGACGCGGTCGGTAGGCCACGCCCTAACTTCTTTTACCGATGTTTTCCC 578
Query 423 AATGGCAAACCGAAATTTGATCCGGATACTAAGGATGTTGTGTGTCATGGAGTTAAAAAG 482
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 579 AATGGTAAACCGAAATTTCATCCGGATACTAAGGATGTTGTGTGTCATGGAGTTAAAAAG 638
Query 483 ATAATCAAAGAAGGTTACAAGAGTTTCCCTAGTGGTCACACTTCGTGGTCCTTCGCTGGT 542
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 639 ATAATCAAAGAAGGTTACAAGAGTTTCCCTAGTGGTCACACTTCATGGTCATTCGCTGGT 698
Query 543 TTGACTTTCCTAGCGTGGTACTTATCGGGTAAAATCAAAGTATTTGACAGAAGAGGTCAC 602
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 699 TTAACTTTCCTAGCGTGGTACTTATCGGGTAAAATCAAAGTCTTTGACAGAAGAGGTCAC 758
Query 603 GTGGCGAAGCTATGCCTTGTGTTCTTACCGATACTCATATCAATTCTCATCGGAATATCA 662
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 GTGGCGAAGCTATGCCTCGTGTTCTTACCGATACTCATATCAATTCTCATCGGAATATCA 818
Query 663 CGCGTAGACGACTATTGGCACCATTGGTCCGATGTCTTCGTCGGAGCTATCATCGGAATC 722
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 819 CGCGTAGACGACTATTGGCACCATTGGACCGATGTCTTCGCCGGAGCTATCATCGGAATT 878
Query 723 TTAGTCGCTTCTTTCTCTTACCTCCACTTTTTTCCATACCCTTACGACGAAAACGGATGG 782
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 879 TTTGTCGCTTCTTTCTCTTACCTCCACTTTTTTCCTTACCCTTACGACGAAAACGGATGG 938
Query 783 GCACCACATGCGTATTTCAGAATGTTGGCGGAGAGGAGTACTGGTAGAGCCACGACAATG 842
|| |||||||||||||| |||||||||||||||||||| |||||| |||||||||| |||
Sbjct 939 GCTCCACATGCGTATTTTAGAATGTTGGCGGAGAGGAGCACTGGTCGAGCCACGACGATG 998
Query 843 ACTCGAACCGGTTCTCGGGGGACGTTGGACAACGACGTCGAGCCTGGCACCTCCGCCTCC 902
||||||||||||||||| || | ||||| ||||||||| |||||||||| |||||| |||
Sbjct 999 ACTCGAACCGGTTCTCGAGGAATGTTGGGCAACGACGTTGAGCCTGGCAACTCCGCGTCC 1058
Query 903 TCGCCGCACGATCGCCACCGTGAAAGCACTGATTCTGACTTTTGAAAAGTTCCTCCGCAA 962
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1059 TCGCCGCACGATCGCCACCGTGAAAGCACTGATTCTGACTTTTGAAAATTTCCTCCACAA 1118
Query 963 TGTT 966
||||
Sbjct 1119 TGTT 1122
> AT3G02600.1 | Symbols: LPP3, ATLPP3 | lipid phosphate phosphatase
3 | chr3:551351-554671 FORWARD LENGTH=1538
Length=1538
Score = 99.0 bits (53), Expect = 8e-20
Identities = 255/347 (73%), Gaps = 35/347 (10%)
Strand=Plus/Plus
Query 287 TCGAAGAGATGTTTATGATCTTCATCACGCCATTCTCGGTATCGGATTCTCATGT-CTTG 345
|||||||||||||||||||||||||||||| | || ||| || || ||| ||| || |
Sbjct 600 TCGAAGAGATGTTTATGATCTTCATCACGCGGTGCTAGGTCTCTTATACTC-TGTTCTGG 658
Query 346 TGACTGGAGTCACC-ACTGATTCCATCAAAGAC-GCTGTTGGTAGGCCACGACCTAACTT 403
|||| | ||| || || ||| | || ||||| || |||||| | ||||| ||| ||||
Sbjct 659 TGACAGCAGT-ACTTACCGATGCAAT-AAAGAATGCAGTTGGTCGACCACGTCCTGACTT 716
Query 404 CTTTTACCGATGTTTTCCCA-ATGGCAAACCGAAATTTGATCCGGATA-C-TAAG-GATG 459
||| | || |||||||| | |||||||| | ||| || | ||| | | | ||||
Sbjct 717 CTTCTGGCGTTGTTTTCC-AGATGGCAAAGCTC--TTT-AT--G-ATAGCCTTGGAGATG 769
Query 460 TTGTGTGTCATGGAGTTAAAAA-GATAATCAAAG-AAGGTTACAAGAG-TTTCCCTAGTG 516
|| | || ||||| | ||||| | | || || | ||||| |||| || ||||| ||||
Sbjct 770 TTATATGCCATGGTGATAAAAGCG-TCAT-AAGGGAAGGTCACAAAAGCTTTCCA-AGTG 826
Query 517 GTCACACTTCGTGGTCCTTCGCTGGTTT-G-ACTTTCCTA-GCGTGGTACTTATCGGGTA 573
| ||||| || ||||| || | ||| | | | |||| | || | ||||||||||| |
Sbjct 827 GACACACGTCATGGTCTTTTTCGGGTCTCGGA-TTTCTTTCGCTT--TACTTATCGGG-A 882
Query 574 AA-AT-CAAAGTATTTGACAG-AAGAGGTCACGTGGCGAAGCTATGC 617
|| || ||| | ||||||| | || ||| ||||| || |||||||||
Sbjct 883 AAGATTCAA-GCATTTGACGGTAA-AGGCCACGTTGCAAAGCTATGC 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47370800621
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5