BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929709

Length=1477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G18310.1 | Symbols:  | unknown protein; Has 30 Blast hits to...   274    2e-72


> AT3G18310.1 | Symbols:  | unknown protein; Has 30 Blast hits 
to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:6284356-6287144 REVERSE 
LENGTH=2789
Length=2789

 Score =  274 bits (148),  Expect = 2e-72
 Identities = 237/277 (86%), Gaps = 18/277 (6%)
 Strand=Plus/Plus

Query  1215  GAGCTTCCACACAATCTACTCTTACCTGCCGGAAAGTGTCAATGCGGAGATTATGTATTT  1274
             |||||||||||||||||||||||||||| ||||||||||| ||||||||||| | |||||
Sbjct  1276  GAGCTTCCACACAATCTACTCTTACCTGTCGGAAAGTGTCTATGCGGAGATTGTCTATTT  1335

Query  1275  AGAGAAGTGATGATGAAGGAGTCTCTACCCGAGTGGATCAATTGGCaaaaaaaGAGTGTT  1334
             |||||||||||||| ||||||||||| |||||||||||  ||||||| ||||||||||||
Sbjct  1336  AGAGAAGTGATGATTAAGGAGTCTCTTCCCGAGTGGATTGATTGGCAGAAAAAGAGTGTT  1395

Query  1335  CATGTTCTCGGTTTTGGTGTTTTAAACAAGTACCTTCCA---G-------A--TCAATCT  1382
             | ||||||||||||||| ||||| |||||||||||||||   |       |  |||||||
Sbjct  1396  CTTGTTCTCGGTTTTGGCGTTTTGAACAAGTACCTTCCACTTGGGTCGTCAGATCAATCT  1455

Query  1383  TCCGC-TTTCAATTTTGATCCGGTTAACAATCCTCAGGAAATCTTGAAGCAGTCAAGTTC  1441
             || |  ||| | ||| |||| |||||||| |||||||| || ||||||||||||||||||
Sbjct  1456  TCGGGGTTT-ACTTT-GATCAGGTTAACA-TCCTCAGGGAAGCTTGAAGCAGTCAAGTTC  1512

Query  1442  TGTGCTTTTTGTTTAAAA-AGTTTAGAAGTAGTTGCT  1477
              |||||| | |||||||| | |||||||||||| |||
Sbjct  1513  CGTGCTTCTCGTTTAAAACA-TTTAGAAGTAGTAGCT  1548



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 72840990795


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5