BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929713
Length=2119
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18350.1 | Symbols: | Plant protein of unknown function (DU... 3408 0.0
> AT3G18350.1 | Symbols: | Plant protein of unknown function (DUF639)
| chr3:6296850-6300673 FORWARD LENGTH=2575
Length=2575
Score = 3408 bits (1845), Expect = 0.0
Identities = 2019/2105 (96%), Gaps = 3/2105 (0%)
Strand=Plus/Plus
Query 18 GGTATGTCGAGTAAAACCCGGAATATGCTTGAAGGATTGGTTAAAGATACTTCTTTTAAA 77
||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 321 GGTATGTCGAGCAAAACCCGGAATATGCTTGAAGGTTTGGTTAGAGATACTTCTTTTAAA 380
Query 78 TGGTTGCTTGGGAAACAAAGTTCTTTCGATGAAGAAATCGAGGAAATGGGAAGATCCCCA 137
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 381 TGGTTGCTCGGGAAACAAAGTTCTTTCGATGAAGAAATCGAGGAAATGGGAAGATCTCCA 440
Query 138 TCTGCTGGGACTAATTGGATACCTGAGCTTTCTCCTATCGCCAATGTGGTTGTCCGCAGG 197
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 441 TCAGCTGGGACTAATTGGATACCTGAGCTTTCTCCTATTGCCAATGTGGTTGTCCGCAGG 500
Query 198 TGTTCAAAAATACTCGGTGTTTCTGCAAACGAGCTGCGAGATAGTTTCAAACAAGAAGCA 257
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 501 TGTTCAAAAATACTCGGTGTTTCTGCAAACGAGCTACGAGATAGTTTCAAACAAGAGGCA 560
Query 258 TTTGAATCTCTCAAGCAGCCTTCTCTATTTGCAAGGAACTTTTTAGAGTACTGTTGTTTC 317
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 561 TTTGAATCTCTCAAGCAGCCTTCTCTATTTCCAAGGAACTTTCTAGAGTACTGTTGTTTC 620
Query 318 AGGGCACTTTCACTGTCTGTTGGAGTAACAGGGCATCTAGCCGATAAAAAGTTTCGGCGC 377
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 621 AGAGCACTTTCACTGTCTGTTGGAGTAACAGGTCATCTAGCCGATAAAAAGTTTCGGCGC 680
Query 378 TTAACATTTGACATGATGGTTGTCTGGGAAGTCCCAGCTGTTTCTAGCCAGGCTTTACTC 437
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 681 TTAACATTTGACATGATGGTTGTCTGGGAAGTCCCAGCTGTTGCTAGCCAGGCTTTACTC 740
Query 438 AGTGTAGAAGAAGATGCAACAGTGAGTTTAGAAGCCTTCTCACGGATCGCACCAGCAGTT 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGTGTAGAAGAAGATGCAACAGTGAGTTTAGAAGCCTTCTCACGGATCGCACCAGCAGTT 800
Query 498 CCTATAATAGCTGATGTGATCATATGTGAAAATCTGTTTAAAATGCTTACTTCAGCAACG 557
|| ||||||||||||||||| |||||||| ||||||||| |||||||||||||| |||||
Sbjct 801 CCAATAATAGCTGATGTGATTATATGTGATAATCTGTTTCAAATGCTTACTTCATCAACG 860
Query 558 GGTGGTCGGCTTCAGTTCTCCGTTTATGACAAGTATTTATATGGACTTGAGAGAGCAATA 617
|||||||||||||||||||| |||||||||||||||||| |||| || ||||||||||||
Sbjct 861 GGTGGTCGGCTTCAGTTCTCTGTTTATGACAAGTATTTACATGGCCTGGAGAGAGCAATA 920
Query 618 AAGAAGATGAGGACTCAGTCCGAATCATCTTTGCTTTCTGGTGTTCGATCAAAAAGAGAA 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 AAGAAGATGAGGACTCAGTCCGAATCATCTTTGCTTTCTGGTGTTCGATCAAAAAGAGAA 980
Query 678 AAGATTCTGGAAATAGACGGGACAGTTACTACCCAACCCGTTCTTGAACATATTGGAATA 737
|||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||
Sbjct 981 AAGATTCTGGAAATAGACGGGACAGTTACTACCCAACCAGTTCTTGAACATGTCGGAATA 1040
Query 738 TCAACGTGGCCAGGTCGCTTAATCCTGACAGACCATTCACTATATTTTGAGGCCTTAAAG 797
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1041 TCAACGTGGCCAGGTCGCTTAATCCTGACAGACCATTCCCTATATTTTGAGGCCTTAAAG 1100
Query 798 GTCGTGTCTTATGACACACCAAAGCGATATGACCTATCTGAAGATCTAAAGCAAATAATT 857
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1101 GTCGTGTCTTATGACACACCAAAGCGATATCACCTATCTGAAGATCTAAAGCAAATAATT 1160
Query 858 AAACCTGAGTTAACTGGTCCTTGGGGCACTCGGCTTTTCGACAAGGCCGTTTCTTACAAG 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1161 AAACCTGAGTTAACTGGTCCTTGGGGCACTCGGCTTTTCGACAAGGCCGTTTCTTACCAG 1220
Query 918 TCTATATCTCTATCAGAACCAGTGGTAATGGAATTCCCAGAGCTTAAAGGCCACACACGC 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 TCTATATCTCTATCAGAACCAGTGGTAATGGAATTCCCAGAGCTTAAAGGCCACACACGC 1280
Query 978 CGTGATTACTGGCTCACTATTATACAAGAAGTATTATACGTTCACAGATACATAAACAAG 1037
||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 1281 CGTGATTACTGGCTCACTATTATACAAGAGGTATTATATGTTCATAGATACATAAACAAG 1340
Query 1038 TACAAGATCACCGGTTTGGCGAGAGACGAAGCACTTTCAAAGGCTGTCCTTGGTGTTATA 1097
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1341 TACAAGATCACCGGTTTGGCAAGAGACGAAGCACTTTCAAAGGCTGTCCTTGGCGTTATG 1400
Query 1098 CGTGTGCAAGCTCTTCAAGAACTCAGTTTGACAAACGCAATGCGGTACGAAAATATTCTC 1157
||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1401 CGTGTCCAAGCTCTTCAAGAACTCAATTTGACAAACGCAATGCGGTACGAAAATCTTCTC 1460
Query 1158 CCGTTCAATCTCTGCGATCAGCTTCCCGGTGGAGATCTGATTCTTGAGACGCTTGCAGAG 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 CCGTTCAATCTCTGCGATCAGCTTCCCGGTGGAGATCTGATTCTTGAGACGCTTGCAGAG 1520
Query 1218 ATGTCTACTTCAAGAGAGCTCCATCGATCAAATAAATCCAAAGATACAGGGACATTACAT 1277
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521 ATGTCTACCTCAAGAGAGCTCCATCGATCAAATAAATCCAAAGATACAGGGACATTACAT 1580
Query 1278 TCCTCAGCTTCTGATATGGTTTCGCAGCTGGGTTCTGTATTTGGAGGGTCAAGTCCTAGG 1337
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1581 TCCTCAGCTTCTGATATGGTTTCGCAGCTGGGTTCTGTGTTTGGAGGGTCAAGTCCTAGG 1640
Query 1338 AGCAGGAGAGACACGAATAATCTTGTGGTAGGTGAAGTAGTGGTTGGGGATGTGAATCCA 1397
|||||||| || |||| || ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1641 AGCAGGAGGGAGACGAGTAGTCTTGTGGTAGGTGAAGTAGTGGTTGGAGATGTGAATCCA 1700
Query 1398 TTAGAGAGAGCAGTGAAGGAGTCGCGTAAGAACTACGAGAAAGTAGTGCTTGCGCAAGAG 1457
|||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||
Sbjct 1701 TTAGAGAGAGCAGTGAAGGAGTCGCGCAAGAAATACGAGAAAGTAGTTCTAGCGCAAGAG 1760
Query 1458 ACAATTAATGGAGTCAAAATGGAAGGCATTGACACCAACTTAGCCGTGATGAAGGAACTG 1517
|| |||||||| || ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1761 ACGATTAATGGGGTGAAAATGGGTGGCATTGACACCAACTTAGCCGTGATGAAGGAACTG 1820
Query 1518 ATGCTTCCGATTATGGAAACAGGGAACTGGATTGTGTCGGTGGTGTATTGGGATGATCCT 1577
|||||||| || |||||||| |||||| ||| | || |||||||||||||||||||||
Sbjct 1821 ATGCTTCCAATAATGGAAACCTGGAACTTAATTCTATCTGTGGTGTATTGGGATGATCCT 1880
Query 1578 ATGAAGTCTAGTGTTTTCTGTCTCGTCTCCACTTTCATAATTTGGAGGGGATGGCTTGTT 1637
| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1881 ACAAAGTCTAGTGTTTTCTGTCTCTTGACCACTTTCATAATTTGGAGGGGATGGCTTGTT 1940
Query 1638 TATGTCTTTGCTCTTGCATCTCTCTTCTCTGCAATCTTCATGGTTCTCACAAGATGTTTC 1697
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1941 TATGTCTTTGCTCTTGCGTCTCTCTTCTCTGCCATCTTCATGGTTCTCACAAGATGTTTC 2000
Query 1698 AGCAGAGAAAAGCTCATGATCGAGCTGAAAGTAACTGCTCCTCCTCCAATGAACACAATG 1757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2001 AGCAGAGAAAAGCTCATGATCGAGCTGAAAGTAACTGCTCCTCCTCCAATGAACACAATG 2060
Query 1758 GAACAACTTTTGGCTGTCCAGAATGGGATCTCGGAGCTCGAACAGAACATTCAAGACGCA 1817
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2061 GAACAGCTTTTGGCAGTCCAGAACGGGATCTCGGAGCTCGAACAGAACATTCAAGACGCA 2120
Query 1818 AACATCGTTCTTCTCAAGTTCCGAGCTTTATTATTCTCGCTTTTCCCTCAGGCGAGCCAG 1877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2121 AACATCGTTCTTCTCAAGTTCCGAGCTTTATTATTCTCGCTTTTCCCTCAGGCGAGCCAG 2180
Query 1878 AAGTTTGCGATTGCGATTGTGGTGGCAGCGACGATGATGGCCTTTGTTCCGGGACGCTAC 1937
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2181 AAGTTTGCGATTGCGATTGTGGTCGCAGCGACGATGATGGCCTTTGTTCCGGGACGCTAC 2240
Query 1938 TTGCTTTCGGTAGTGTTTGTTGAGCTTTTCACAAGATACTCACCACCACGGAGAGCTAGC 1997
||||||||||| || |||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 2241 TTGCTTTCGGTTGTATTTGTTGAGCTTTTCACAAGATACTCGCCACCAAGGAGAGCTAGC 2300
Query 1998 ACGGAACGGTTGATAAGGCGGTTGAGAGAGTGGTGGTTTAGTATACCAGCGGCTCCAGTG 2057
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2301 ACGGAACGGTTAATAAGGCGGTTGAGAGAGTGGTGGTTTAGTATACCAGCGGCTCCAGTG 2360
Query 2058 GTCCTCCAACATGACAAGAACAATAATAAGAAGAAGAACTGA--GGAGA-CGTCTATAGT 2114
||||| | |||||||||||||||||| ||||||||||||| | ||||| ||||||||||
Sbjct 2361 GTCCTTCTACATGACAAGAACAATAAGAAGAAGAAGAACTAATTGGAGAGCGTCTATAGT 2420
Query 2115 TGCCA 2119
|||||
Sbjct 2421 TGCCA 2425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105069740685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5