BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929716

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G18940.1 | Symbols:  | clast3-related | chr3:6526958-6529149...   219    1e-56


> AT3G18940.1 | Symbols:  | clast3-related | chr3:6526958-6529149 
REVERSE LENGTH=1068
Length=1068

 Score =  219 bits (118),  Expect = 1e-56
 Identities = 183/211 (87%), Gaps = 18/211 (9%)
 Strand=Plus/Plus

Query  60   ACATGCCTGCTATGTTACTGTTCTGAAGGAGATAACATTTCTGAAGCATTTCTTCTAGCG  119
            |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| 
Sbjct  760  ACATGCCTGCTATGTTACTGTTCTGAAGGAGACAACATTCCTGAAGCATTTCTTCTAGCT  819

Query  120  GAGGCTGT-ATCTAAGCTTACGGG----AC-----A-A-GTTCCATGGGGAAGAAGGTGG  167
            |||||| | ||||||||||| |||    ||     | | |||||||||||||||||||||
Sbjct  820  GAGGCT-TCATCTAAGCTTATGGGTCTGACTCCTGACAAGTTCCATGGGGAAGAAGGTGG  878

Query  168  AAAATGGCTGATACCGTATTCGTGGAAGAGTATGTAATGTATGGAGCTCCTCCGGATATG  227
             ||||||| |||||||||||| |||||||||||||| ||   | ||||||||||||||||
Sbjct  879  GAAATGGCAGATACCGTATTCATGGAAGAGTATGTA-TG---G-AGCTCCTCCGGATATG  933

Query  228  TCCATGTTTTAAGACTGTTATTGGAACTCAC  258
            || |||||||||||||||| ||||| |||||
Sbjct  934  TCTATGTTTTAAGACTGTTGTTGGAGCTCAC  964



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11812921015


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5