BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929717
Length=2494
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18370.1 | Symbols: SYTF, ATSYTF, NTMC2TYPE3, NTMC2T3 | C2 d... 3967 0.0
> AT3G18370.1 | Symbols: SYTF, ATSYTF, NTMC2TYPE3, NTMC2T3 | C2
domain-containing protein | chr3:6305975-6310620 FORWARD LENGTH=3199
Length=3199
Score = 3967 bits (2148), Expect = 0.0
Identities = 2357/2460 (96%), Gaps = 6/2460 (0%)
Strand=Plus/Plus
Query 1 CTTGAAGGCGAATTGAAGAGATGGGTCGGAGAATAAAGAGGAAAGGTCTGATAAACACGG 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 CTTGAAGGCGAATCGAAGAGATGGGTCGGAGAATAAAGAGGAAAGGTCTGATAAACACGG 427
Query 61 AAGCTGTTAGAGAGTTTATCAATCATCTAGTTGCTGAGAGACATTCGCTGTTGTTGCTGG 120
|||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 428 AAGCTGCAAGAGAATTTATCAATCATCTAGTTGCTGAGAGGCATTCGCTGTTGTTGCTGG 487
Query 121 TTCCTTTGGTCTTAGCTTTCTGGGCAATTGAGAGATGGGTCTTTGCTTTCTCCAATTGGG 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 488 TTCCTTTGGTCTTAGCTTTCTGGGCAATTGAAAGATGGGTCTTTGCTTTCTCCAATTGGG 547
Query 181 TTCCTCTCGTTGTCGCCGTTTGGGCTTCTCTTCAGTATGGAAGTTACCAAAGGGCAATAC 240
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 548 TTCCTCTCGTTGTCGCCGTCTGGGCTTCTCTTCAGTATGGAAGTTACCAAAGGGCACTAC 607
Query 241 TTGCAGAAGATCTTACCAAGAAGTGGAGGCAAACCGTTTTCAATGCGTCGACGATAACTC 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 TTGCAGAAGATCTAACCAAGAAGTGGAGGCAAACCGTTTTCAATGCGTCGACGATAACTC 667
Query 301 CATTGGAACATTGTCAATGGCTGAACAAGTTACTGTCTGAAATTTGGCTAAACTATATGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 CATTGGAACATTGTCAATGGCTGAACAAGTTACTGTCTGAAATTTGGCTAAACTATATGA 727
Query 361 ACAAGAAACTCTCGCTCAGATTTTCTTCTATGGTGGAGAAACGATTGAGGCAACGAAGAT 420
||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 728 ACAAGAAACTCTCTCTTAGGTTTTCTTCTATGGTGGAGAAACGATTGAGGCAACGAAGAT 787
Query 421 CAAGATTAATAGAAAATATACAATTGTTGGAGTTTTCTCTTGGCTCGTGCCCTCCTTTGC 480
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 788 CAAGATTAATCGAAAATATACAATTGTTGGAGTTTTCTCTTGGCTCATGCCCTCCTTTGC 847
Query 481 TGGGACTCCATGGAACTTGTTGGTCAAAATCAGGGGAACAGAAAATTATGCGATTGGATT 540
| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 848 TAGGACTACATGGAACTTGTTGGTCAAAATCAGGGGAACAGAAAATCATGCGATTGGATT 907
Query 541 TCAGTTGGGACACAACGGATCTAAGCATTTTGTTGCAAGCCAAGTTATCCAAACCATTTA 600
||| |||||||||||||||||||| ||||||||||||||||||||||||| || ||||
Sbjct 908 TCAACTGGGACACAACGGATCTAAGTATTTTGTTGCAAGCCAAGTTATCCATGCCGTTTA 967
Query 601 ATCGAACAGCACGAATCGTTGTCAATAGTCTCTGCATCAAGGGCGATATTCTGATCAGAC 660
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 968 ATCGAACAGCACGAATCGTTGTCAACAGTCTCTGCATCAAGGGAGATATTCTGATCAGAC 1027
Query 661 CGATTCTTGAAGGAAAAGCATTGCTTTATTCCTTTGTATCGAATCCTGAAGTTAGAATCG 720
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 CGATTCTTGAAGGAAGAGCATTGCTTTATTCCTTTGTATCGAATCCTGAAGTTAGAATCG 1087
Query 721 GAGTTGCTTTCGGTGGTGGCGGTGGCCAATCTCTCCCCGCGACAGAGCTCCCCGGTGTCT 780
|||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 1088 GAGTTGCTTTCGGTGGTGGCGGTGGCCAATCTCTCCCCGCTACAGAGCTTCCTGGTGTCT 1147
Query 781 CCTCTTGGCTGGTAAAGATTCTAACGGAAACTTTGAACAAGAAGATGGTAGAGCCACGCC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 CCTCTTGGCTGGTAAAGATTCTAACGGAAACTTTGAACAAGAAGATGGTAGAGCCACGCC 1207
Query 841 GGGGATGTTTCTCGTTACCAGCAACCGATCTTCACAAAACAGCCATCGGGGGAATCATCT 900
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1208 GGGGATGTTTCTCGTTACCCGCAACAGATCTTCACAAAACAGCCATCGGGGGAATTATCT 1267
Query 901 ACGTAATCGTTGTCTCTGGTAACAATCTTAACCGCAGCATTCTTCGGGGAAGCCCGTC-A 959
|||||| |||||| ||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 1268 ACGTAACCGTTGTATCTGGTAACAATCTTAACCGCAGAATTCTTCGGGGAAGCCCCTCGA 1327
Query 960 AGAAGTTCTGATATTGGAGACGGTAGCAGCGGAAATAGCAGCAGCAAACCTGTTCAGACA 1019
| ||||||||| || ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1328 A-AAGTTCTGAGATCGGAGAAGGTAGCAGCGGAAATAGCAGCAGCAAACCTGTTCAAACA 1386
Query 1020 TTTGTCGAGGTCGAACTCGAACAACTTTCTCGACGAACCGAGATGAAGTCAGGACCGAAT 1079
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1387 TTTGTGGAGGTCGAACTCGAGCAACTTTCTCGACGAACCGAGATGAAGTCAGGACCGAAT 1446
Query 1080 CCAGCTTATCAATCGACATTTAACATGATCTTACACGACAATACAGGGACACTCAAATTT 1139
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1447 CCAGCTTATCAGTCGACATTTAACATGATCTTACACGACAATACAGGGACACTCAAGTTT 1506
Query 1140 AACCTCTATGAAAATAATCCTGGGAGTGTCAGATACGACAGTCTCGCTAGCTGCGAAGTT 1199
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1507 AACCTCTATGAAAATAATCCTGGGAGTGTCAGATATGACAGTCTCGCTAGCTGTGAAGTT 1566
Query 1200 AAGATGAAATACGTTGGTGATGATTCAACGATGTTTTGGGCCGTTGGATCTGATAACAGT 1259
||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1567 AAGATGAAATATGTAGGTGATGATTCAACGATGTTTTGGGCCGTTGGATCTGATAACGGT 1626
Query 1260 GTGATTGCGAAACACGCTGAGTTCTGTGGTCAAGAAATCGAGATGGTTGTTCCGTTTGAA 1319
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1627 GTGATTGCAAAACACGCTGAGTTCTGTGGTCAAGAAATCGAGATGGTTGTTCCGTTTGAA 1686
Query 1320 GGAGTCAGCTCCGGCGAGTTGACGGTCAGGCTACTTCTAAAAGAATGGCATTTCTCTGAT 1379
||||| |||||||| |||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct 1687 GGAGTTAGCTCCGGAGAGTTGACTGTCCGGCTACTTCTAAAAGAATGGCACTTCTCTGAT 1746
Query 1380 GGCTCACATAGCTTGAATAGCGTTAATTCGAGTTCATTACACTCCCTCGACAGCTCGTCT 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1747 GGCTCACATAGCTTGAATAGCGTTAATTCGAGTTCATTACACTCCCTCGACAGCTCGTCT 1806
Query 1440 GCCCTCCTCTCGAAAACCGGCCGGAAAATTATTGTGACGGTTTTGTCTGGAAAAAACCTT 1499
|||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct 1807 GCCCTCCTCTCGAAAACCGGCCGGAAAATTATCGTGACGGTTTTGGCTGGAAAGAACCTT 1866
Query 1500 GTTTCTAAAGACAAGTCCGGAAAATGTGATGCATCCGTCAAGTTGCAGTACGGGAAAATT 1559
||||||||||| |||||||||||||||||||| || |||||||| |||||||| ||||||
Sbjct 1867 GTTTCTAAAGATAAGTCCGGAAAATGTGATGCCTCTGTCAAGTTACAGTACGGAAAAATT 1926
Query 1560 ATACAAAAGACGAAGATAGTGAACGCAGCGGAGAGTGCCTGGAACCAGAAATTTGAGTTC 1619
||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct 1927 ATACAAAAGACGAAGATAGTGAACGCAGCAGAGTGTGTGTGGAACCAGAAATTTGAGTTC 1986
Query 1620 GAAGAGTTAGCCGGGGAAGAATATTTAAAGGTGAAATGCTACAGAGAAGAGATGCTTGGC 1679
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1987 GAAGAGTTAGCCGGAGAAGAATATTTAAAGGTGAAATGCTATAGAGAAGAGATGCTTGGC 2046
Query 1680 ACGGACAACATCGGTACAGCTACATTGAGTCTTCAAGGAATCAATAACAGCGAAATGCAT 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2047 ACGGACAACATCGGTACAGCTACATTGAGTCTTCAAGGAATCAATAACAGCGAAATGCAT 2106
Query 1740 ATATGGGTTCCGCTTGAAGAGGTTAATTCTGGAGAAATAGAGCTTTTGATCGAAGCTATG 1799
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 2107 ATATGGGTTCCGCTTGAAGATGTTAATTCTGGAGAAATAGAGCTTTTGATCGAAGCTTTG 2166
Query 1800 GATCCCGAGTACAGCGAAGCGGATGCTAGTAAAGGCATGATTGAATTGGTTCTCGTTGAA 1859
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 2167 GATCCCGAGTACAGCGAAGCGGATTCTAGTAAAGGCTTGATTGAATTGGTTCTCGTTGAA 2226
Query 1860 GCGCGGGATCTTGTGGCCGCGGATCTTAGAGGAACCAGTGATCCTTATGTTAGGGTTCAA 1919
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2227 GCGCGGGATCTTGTGGCCGCGGATATTAGAGGAACCAGTGATCCTTATGTTAGGGTTCAA 2286
Query 1920 TATGGAGAGAAGAAACAGAGGACAAAGGTGATTTATAAGACACTGCAACCAAAATGGAAC 1979
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2287 TATGGAGAGAAGAAACAGAGGACAAAGGTGATTTATAAGACGTTGCAACCAAAATGGAAC 2346
Query 1980 CAGACAATGGAGTTTCCAGATGATGGGAGCTCCTTGGAGCTACATGTGAAAGACCATAAC 2039
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2347 CAGACAATGGAGTTTCCAGATGATGGGAGCTCCTTGGAGCTACATGTGAAAGACTATAAC 2406
Query 2040 ACTCTGCTTCCGACTTCAAGCATCGGTAACTGCGTCGTGGAGTACCAAGGGTTAAAGCCA 2099
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2407 ACTCTGCTTCCGACTTCAAGCATCGGTAACTGCGTTGTGGAGTACCAAGGGTTAAAGCCA 2466
Query 2100 AATGAGACTGCCGATAAGTGGATACCTCTCCAAGGAGTGACATGCGGCGAGGTCCATGTC 2159
|||||||||||||||||||||||| |||||||||||||| | ||| ||||||||||||
Sbjct 2467 AATGAGACTGCCGATAAGTGGATAATTCTCCAAGGAGTGAAACACGGGGAGGTCCATGTC 2526
Query 2160 AGAGTCACGAGGAAAGTCACGGAGATTCAGAGACGCCCCAGCGCGGGGTC-TGGCTCCCC 2218
|||||||||||||||||||||||||||||||||||| ||||||| || || |||| | ||
Sbjct 2527 AGAGTCACGAGGAAAGTCACGGAGATTCAGAGACGCGCCAGCGCAGG-TCCTGGCACACC 2585
Query 2219 GTTTAACAAAGCTCTGTTGCTGTCCAACCAGATGAAGCAGGTGATGATAAAGTTTCAGAA 2278
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2586 GTTTAACAAAGCTCTGTTACTGTCCAACCAGATGAAGCAGGTGATGATAAAGTTTCAGAA 2645
Query 2279 TTTGATTGACGATGGAGATCTTGAAGGTCTTTCTGAAGCTTTAGAAGAGCTGGAGAGTTT 2338
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 2646 TTTGATTGACGATGGAGATCTTGAAGGTCTTGCTGAAGCTTTAGAAGAGCTGGAAAGTTT 2705
Query 2339 GGAGGTCGAACAAGAAGAGTATTTGGTCCAGCTTCAGACAGAGCAAAT-GCTGCTTATCA 2397
||||| |||||||||| |||||||| |||||||||||||||||||| | |||||||||||
Sbjct 2706 GGAGGACGAACAAGAACAGTATTTGCTCCAGCTTCAGACAGAGCAA-TCGCTGCTTATCA 2764
Query 2398 ACAAGATCAAAGACCTTGGTAAGGAGATTCTTAACTCGTCCCCAGTTCAAGCCCCATCTC 2457
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||
Sbjct 2765 ACAAGATCAAAGACCTTGGTAAGGAGATTCTTAACTCATCCCCAGCTCAAGCCCCGTCTC 2824
Score = 91.6 bits (49), Expect = 3e-17
Identities = 51/52 (98%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 2421 GAGATTCTTAACTCGTCCCCAGTTCAAGCCCCATCTCATTCCCCATCTCGAT 2472
|||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2825 GAGATTCTTAACTCGTCCCCAGTTCAAGCCCCGTCTCATTCCCCATCTCGAT 2876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123761848381
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5