BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929719
Length=2581
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18390.1 | Symbols: EMB1865 | CRS1 / YhbY (CRM) domain-conta... 4205 0.0
> AT3G18390.1 | Symbols: EMB1865 | CRS1 / YhbY (CRM) domain-containing
protein | chr3:6313485-6317971 FORWARD LENGTH=3021
Length=3021
Score = 4205 bits (2277), Expect = 0.0
Identities = 2474/2571 (96%), Gaps = 6/2571 (0%)
Strand=Plus/Plus
Query 17 GTCAATGGCTTTGGTTCCACTTAATTTTACGGAAATGCCACTGAGAAGCTCTCTTCCTTT 76
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 84 GTCAATGGCTTTGGCTCCACTTAATTTTACGGAAATGCCACTGAGAAGCTCTCTTCCTCT 143
Query 77 GACCTCTAGCTCTCGCTACTGTTCGTCTCCTTCGCTTCACGCATTGTTATTCTATTCGTT 136
|||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||||||
Sbjct 144 GACCTCTAGCTCTCGCTATTGTTCCTCTCCTTCGCTTCACGCATTGCTCTTCTATTCGTT 203
Query 137 AGCTGCGAAACCCTCGCGTCATCAAATTATTCGGCCATTCTTTTCGCTCCGTACAAGCGA 196
| || ||||||||||||||| |||||| |||||||||||| |||||| |||||||||||
Sbjct 204 GGGTGTGAAACCCTCGCGTCAACAAATTGTTCGGCCATTCTCTTCGCTGCGTACAAGCGA 263
Query 197 GCGTAGCAACAATAGGAGCAATAACAATCGTCGAGTGGATCAGCGGAATCATAAACCTAC 256
|||||||||||| ||||||||||||||||||||| | ||||| || ||||||||||||||
Sbjct 264 GCGTAGCAACAACAGGAGCAATAACAATCGTCGATTAGATCAACGTAATCATAAACCTAC 323
Query 257 TCCTCCTTGGATTGATAAGTGGCCTCCGTCATCCGCCGGAGCTGGCGGTGATCATGCTGG 316
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 324 TCCTCCTTGGATAGATAAGTGGCCTCCGTCATCCTCCGGAGCTGGCGGTGATCATGCCGG 383
Query 317 GAAGAGAGGTAGTGAAAACAACGGCGGAGATAAAATTCGGTCGGCGGAGGAGGAAGCGGA 376
||||| |||| ||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 384 GAAGAAAGGTGGTGAAAACAACGGCGGAGATAGAATTCGGTCTGCGGAGGAGGAAGCGGA 443
Query 377 AGCGAAACTTCGGTATTTGGAGCGGGATAAAGGACAAAACGCGATTGAGAGGATTGTTCT 436
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 444 AGCGAAACTTCGGTATTTGGAGAAGGATAAAGGACAAAACGCGATTGAGAGGATTGTTCT 503
Query 437 TCGGCTACGGAATTTAGGATTAGGTTCGGATGATGAGGACGATGTGGAAGATGACGAGGG 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 TCGGCTACGGAATTTAGGATTAGGTTCGGATGATGAGGACGATGTGGAAGATGACGAGGG 563
Query 497 AGGCGGAATTAACGGCGGAGATGTGAAGCCGGTGACTGGAGAAGAGAGATTGGGGGATTT 556
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 AGGTGGAATTAACGGCGGAGATGTGAAGCCGGTGACTGGAGAAGAGAGATTGGGGGATTT 623
Query 557 GTTGAAGAGAGAGTGGGTGAGACCTGATATGATACTGGCTGAGGGAGAAGAGAGTGAGGA 616
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 624 GTTGAAGAGAGAGTGGGTGAGACCTGATATGATGCTTGCTGAGGGAGAAGAGAGTGAGGA 683
Query 617 AGAGGATGAGGTGTTATTGCCATGGGAGAAGAATGAGGAAGAACAGGCGGCGGAGAGAGT 676
|||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 684 AGAGGATGAGGTATTATTGCCATGGGAGAAAAATGAGGAAGAGCAGGCGGCGGAGAGAGT 743
Query 677 AGAAGGAGAAGGAGGAGTGGCGGTGATGAAGAAGAGGAGAGCTAGAGCTCCATCTCTGGC 736
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 744 AGTAGGAGAAGGAGGAGTGGCGGTGATGCAGAAGAGGAGAGCTAGAGCTCCATCACTGGC 803
Query 737 GGAGCTTACCGTTGAGGATTCTGAGTTACGGCGGTTGAGGAGGGATGGAATGTATTTGAG 796
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 804 GGAGCTCACCGTTGAGGATTCTGAGTTACGGCGGTTAAGGAGGGATGGAATGTATCTGAG 863
Query 797 GGTAAGGATCAATATACCAAAAGCTGGGCTAACGCAGGCAGTGATGGAAAAGATTTATGA 856
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 864 GGTTAGGATCAATATACCAAAAGCTGGGCTAACGCAGGCAGTGATGGAGAAGATTTATGA 923
Query 857 TACTTGGAGGAAAGAAGAACTTGTGAGGCTAAAGTTCCATGAAGTGCTTGCTCGTGACAT 916
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 924 TACTTGGAGGAAAGAAGAGCTTGTGAGGCTAAAGTTCCACGAAGTGCTTGCTCGTGACAT 983
Query 917 GAAGACGGCCCATGAGATTGTTGAGCGTCGTACTGGAGGAATGGTGATATGGAGGGCTGG 976
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 984 GAAGACGGCCCATGAGATTGTTGAGCGTCGAACTGGTGGAATGGTGATATGGAGGGCCGG 1043
Query 977 AAGTGTAATGGTGGTTTATCGTGGACTTGACTATAAAGGACCTCCTGTGATCTCTAATCA 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 AAGTGTAATGGTGGTTTATCGTGGACTTGACTATAAAGGACCTCCTGTGATCTCTAATCA 1103
Query 1037 AATGGCCGGGCCAAAAGAGACTCTTTTTGTCCCAGATGTATCTTCTGCTGGCGATGAAGC 1096
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 AATGGCCGGTCCTAAAGAGACTCTTTTTGTCCCAGATGTATCTTCTGCTGGCGATGAAGC 1163
Query 1097 AACAAATGCCAAAGATAACCAAAGTCCACCTTTGGAAATCAAAGATCCCATCAGCAAGAA 1156
||||||||||||||||||||||||| ||||||||| |||||||||||| |||| ||||||
Sbjct 1164 AACAAATGCCAAAGATAACCAAAGTGCACCTTTGGTAATCAAAGATCCGATCATCAAGAA 1223
Query 1157 CCCTATTCGTAAAGAGAATATGTCAGAAGAAGAAGCTGAATTTAACAGTCTATTAGACAG 1216
||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1224 CCCTATTCGCAAAGAGAATATGACAGAAGAAGAAGTTGAATTTAACAGTCTATTAGACAG 1283
Query 1217 CTTAGGTCCACGTTTTCAAGAGTGGTGGGGTACTGGGGTGCTACCTGTGGACGCTGACTT 1276
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1284 CTTAGGTCCACGTTTTCAAGAGTGGTGGGGTACTGGGGTACTACCTGTGGACGCTGACTT 1343
Query 1277 ACTACCTCCTACAATTCCTGGTTATAAAACACCTTTCAGACTTCTTCCTACTGGGATGAG 1336
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1344 ACTACCTCCTACAATTCCTGGTTATAAAACACCTTTCAGGCTTCTTCCTACTGGGATGAG 1403
Query 1337 ATCAAATTTGACCAATGCCGAAATGACAAATCTTAGGAAGATTGGTAAAACTCTCCCATG 1396
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1404 ATCAAATTTGACCAATGCCGAAATGACAAATCTCAGGAAGATTGGTAAAACTCTCCCATG 1463
Query 1397 CCATTTTGCTCTTGGCAGGAACAGAAATCACCAAGGATTGGCAGCTGCAATACTCCAGAT 1456
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 CCATTTTGCTCTTGGTAGGAACAGAAATCACCAAGGATTGGCAGCTGCAATACTCCAGAT 1523
Query 1457 CTGGGAGAAAAGTCTAATTGCAAAGATCGCTGTGAAGCGAGGTATCCAGAATACAAATAA 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 CTGGGAGAAAAGTCTAATTGCAAAGATCGCTGTGAAGCGAGGTATCCAGAATACAAATAA 1583
Query 1517 CAAACTAATGGCGGATGAAGTGAAGGCATTGACAGGGGGTGTCTTGCTGCTCAGAAATAA 1576
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1584 CAAACTAATGGCGGATGAAGTGAAGACATTGACAGGGGGTGTCTTGCTGCTCAGAAATAA 1643
Query 1577 GTATTACATTGTAATATATCGTGGGAAGGACTTCCTTCCTTCAAGTGTGGCAGCTACTTT 1636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1644 GTATTACATTGTAATATATCGTGGGAAGGACTTCCTTCCTTCAAGTGTGGCAGCTACTTT 1703
Query 1637 GGCAGAAAGACAAGAATTAACAAAAGAGATTCAAGATGTCGAAGAGAGGGTAAGAAATCG 1696
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1704 AGCAGAAAGACAAGAATTAACGAAAGAGATTCAAGATGTCGAAGAGAGGGTAAGAAATCG 1763
Query 1697 CGAGATTGAGGCTGTTCAGCCTGTTGGTGACAAAGTACCAGCAGAAGCTGGCACTCTGGC 1756
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1764 TGAGATTGAGGCTGTTCAGCCTGTTGGTGACAAAGTACCAGCAGAAGCTGGCACTCTGGC 1823
Query 1757 CGAGTTTTATGAGGCTCAAGCTCGATGGGGGAAGGAAATAACTCCGGACCATCGTGAAAA 1816
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1824 CGAGTTTTATGAGGCTCAAGCCCGATGGGGGAAGGAAATAACTCCAGACCATCGTGAAAA 1883
Query 1817 GATGATTGAAGAAGCTTCAAGGGTCGCGAACGCTAGAGTTGTTAAACGAATCCAACACAA 1876
|||||||||||||||||||||||| || || |||||||||||||||||||| ||||||||
Sbjct 1884 GATGATTGAAGAAGCTTCAAGGGTTGCAAATGCTAGAGTTGTTAAACGAATACAACACAA 1943
Query 1877 ACTAAACCTTGCCCAATCAAAGTTTCAAAGAGCAGAGAAACTGTTGTCCAAAATAGAAGC 1936
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1944 ACTAAACCTTGCCCAATCGAAGTTTCAAAGAGCAGAGAAACTGTTGTCCAAAATAGAAGC 2003
Query 1937 CTCAATGATTCCAAATGGACCTGATTATGATCAAGAGGTCATCTCCGAGGAAGAAAGAGC 1996
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2004 CTCTATGATTCCAAATGGACCTGATTATGATCAAGAGGTCATCTCCGAGGAAGAAAGAGC 2063
Query 1997 TATGTTCCGGAAAGTGGGATTGAAAATGAAGGCATACTTACCCTTAGGTATCCGTGGTGT 2056
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 2064 TATGTTCCGGAAAGTGGGACTGAAAATGAAGGCATACTTACCCATAGGTATCCGTGGTGT 2123
Query 2057 TTTTGATGGAGTCATTGAGAACATGCATCTGCATTGGAAGCACAGAGAATTAGTGAAGCT 2116
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2124 ATTTGATGGAGTCATTGAGAACATGCATCTGCATTGGAAACACAGAGAATTGGTGAAGCT 2183
Query 2117 TATATCAAAACAGAAGAACCTAGCATTTGTTGAGGACACAGCCCGGTTACTAGAATATGA 2176
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||
Sbjct 2184 TATATCAAAACAGAAGAACCAAGCATTTGTTGAGGAGACAGCCCGGTTACTAGAATACGA 2243
Query 2177 GAGTGGTGGAGTTCTTGTGGCAATAGAAAAGGTTCCTAAAGGATTTGCGCTTATTTATTA 2236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2244 GAGTGGTGGAGTTCTTGTGGCAATAGAAAAGGTTCCTAAAGGATTTGCGCTTATTTATTA 2303
Query 2237 CCGTGGGAAGAATTACAGGAGACCCATTAGCTTGAGACCAAGAAATCTTCTGACAAAAGC 2296
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2304 CCGTGGGAAGAATTACAGGAGACCCATTAGCTTGAGACCAAGGAATCTTCTGACAAAAGC 2363
Query 2297 AAAAGCATTGAAACGTTCCATTGCAATGCAACGCCACGAGGCACTTAGTCAGCATATTTC 2356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2364 AAAAGCATTGAAACGTTCCATTGCAATGCAACGCCACGAGGCACTTAGTCAGCATATTTC 2423
Query 2357 TGAACTGGAGAGAACAATAGAGCAAATGCAAAGCGAACTCACTTCGAAAAACCCGTCATA 2416
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2424 TGAACTGGAGAGAACAATAGAGCAAATGCAAAGCCAACTCACTTCGAAAAACCCGTCATA 2483
Query 2417 CAGTGAATCAGAATGGGAAAACgatgaggatgatgatgagga-g--ga-g--gagaaaga 2470
|||||||||||||||||| |||||||||||||||||||| || | || | ||||||||
Sbjct 2484 CAGTGAATCAGAATGGGAGAACGATGAGGATGATGATGATGATGAAGAAGAAGAGAAAGA 2543
Query 2471 tgatgtggaagataatgagagtgattgggatgaAACTGATGGCGAATCTACACTTTCTAA 2530
||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 2544 TGATGTGGAGGATAATGAGAGTGATTGGGATGAAACTGATGGCGAATCTGCAATTTCTAG 2603
Query 2531 TATCGACGAAGCTGACATTTCATCGCGCTAAGCTGATAAAGTTTTGAACAC 2581
|||||| |||||||| || |||||||||||||||||||||||||| |||||
Sbjct 2604 TATCGAAGAAGCTGATATGTCATCGCGCTAAGCTGATAAAGTTTTTAACAC 2654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128126372422
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5