BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929729
Length=304
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18485.1 | Symbols: ILR2 | iaa-leucine resistant 2 | chr3:63... 357 3e-98
> AT3G18485.1 | Symbols: ILR2 | iaa-leucine resistant 2 | chr3:6341918-6343178
REVERSE LENGTH=1161
Length=1161
Score = 357 bits (193), Expect = 3e-98
Identities = 241/264 (91%), Gaps = 3/264 (1%)
Strand=Plus/Plus
Query 1 TGTATCGCCGATAAGCGTGCAACCTATGAGTTCAGTTACCAGCTCAAAAGCACAGCTCGC 60
||||| || |||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 886 TGTATTGCTGATAAGCGTGCAACCTATGAGTTCGGTTACCAGCTCAAAAGCACAGTTCGC 945
Query 61 AACCTCCCTCCCTTTGCGGAAGCTGTTGCCGCCTTCTCTCAGACACATATCAGGATGTTT 120
|||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 946 AACCTCCCTCCCCTTGCGGAAGCACTTGCCGCCTTCTCTCAGACATATATCAGGATGTTT 1005
Query 121 CCTAACCATCCCCTTTTTCGGTACGGTTGGATCGAAAACTCTTGATCATGGCCTGTTCTG 180
||||||||| ||||| ||||| ||| |||| |||||||||||||||||||||| ||||||
Sbjct 1006 CCTAACCAT-CCCTTCTTCGGGACGTTTGGGTCGAAAACTCTTGATCATGGCCCGTTCTG 1064
Query 181 GAAAATAAGGCCTCTTGGCTCCGGCCTT-CCTGATAAAAGCGCTTACCTTACCATCCCAT 239
||||||||||||| |||||||| ||||| || ||||| ||| | ||||| || |||||||
Sbjct 1065 GAAAATAAGGCCTATTGGCTCCAGCCTTACC-GATAACAGCTCCTACCTCACTATCCCAT 1123
Query 240 CGATTGTCAAGCAAGCATTCAAAG 263
||||||||||||||||||||||||
Sbjct 1124 CGATTGTCAAGCAAGCATTCAAAG 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14074969720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5