BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929731
Length=1348
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18500.3 | Symbols: | DNAse I-like superfamily protein | ch... 1773 0.0
> AT3G18500.3 | Symbols: | DNAse I-like superfamily protein |
chr3:6352477-6355358 FORWARD LENGTH=1478
Length=1478
Score = 1773 bits (960), Expect = 0.0
Identities = 1218/1335 (91%), Gaps = 48/1335 (4%)
Strand=Plus/Plus
Query 46 TTGTTCTTGGTCACGGCCAAGCGAAGCTTACCGTATC--ATCC-CC--T--TC-GC-TTC 96
||||||||||||||||||||||||||||||||||||| | || || | || | |||
Sbjct 91 TTGTTCTTGGTCACGGCCAAGCGAAGCTTACCGTATCTTACCCTCCGGTGGTCACCTTTC 150
Query 97 GTCTGGATTCCATCAATGTCCTTCATCGTCTCTATCTTTCCGTTCCTCTTTC--GTG-TG 153
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||
Sbjct 151 ATCTGGATTCCATCAATGTCCTTTATCGTCTCTATCTTTCCGTTCCTCTTTCGTGTGTTG 210
Query 154 ---------------T-----GTCCGATTCAAATCCCGAATCATCTTCAAATCGCTCTTA 193
| |||||||||||||||||||||||||||||||||||||||
Sbjct 211 CTCCTCCTCCACATCTGGACCGTCCGATTCAAATCCCGAATCATCTTCAAATCGCTCTTA 270
Query 194 CAGCCGTAGATGGCACAATCCCCTTCCCCGGCGTCGACATCCCGATCAAATGCCGTCATC 253
||||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||| ||
Sbjct 271 CAGCCGTAGATGGCAGAATCCTCTTCCCCGGCGTCAACATCCCGATCAAATACCGTCTTC 330
Query 254 TCGGATTGTTCGTGATTGGATCGATTCAGATACAACTCCAGTTTCCCAAGCTTCAGAGAG 313
|| ||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 331 TCAGATTGCTCGTGATTGGATCGATTCAGATACAACTCCAGTTTCTCAAGCTTTAGAGAG 390
Query 314 ATTCACTGTAGTGTCATACAACATACTGGGAGATAGAAATTCATCATATCATAGAGATTT 373
||||||||||||||| ||||||||| |||||||| |||||||||||||||| ||||| ||
Sbjct 391 ATTCACTGTAGTGTCGTACAACATATTGGGAGATGGAAATTCATCATATCACAGAGAGTT 450
Query 374 GTACTCCAATGTGTCCT-TTCCTTACCTCAAGTGGGGCTACCGCAAACGGTTGATATGCG 432
|||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 451 GTACTCCAATGTGT-CTGTTCCTTACCTCAAGTGGGGCTACCGCAAAAGGTTGATATGCG 509
Query 433 AAGAACTCATTCGTCTCAATCCAGACATAATCTGTATGCAGGAAGTAGACAAGTATTTTG 492
||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||
Sbjct 510 AAGAACTCATTCGTCTCAATCCAGACATAATCTCTATGCAGGAAGTAGATAAATATTTTG 569
Query 493 ATCTGTTCAGCACGACGGAGAAAGCTGGATATGCTGGCTCCTATAAGCGGCGAACTGGAG 552
|||| ||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 ATCTATTCAGTATGATGGAGAAAGCTGGATATGCTGGCTCCTATAAGCGGCGAACTGGAG 629
Query 553 ATAACATCGATGGGTGCGCAATGTTTTGGAAGGCTGATAGCTTTCGAGTTTTGGAGAGGG 612
||||| ||||||| ||||||||||||||||||||||| || ||| |||||||||||||||
Sbjct 630 ATAACGTCGATGGTTGCGCAATGTTTTGGAAGGCTGACAGGTTTGGAGTTTTGGAGAGGG 689
Query 613 AAAATATTGAGTTTAGCCAGTTTGGTATGCGCGATAATGTTGCGCAGCTTGCTGTTCTTG 672
|||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 690 AAAACATTGAGTTTAGCCAGTTTGGTATGCGGGATAATGTTGCACAGCTTGCTGTTCTTG 749
Query 673 AGCTGCGGAAGTCTAATAAGTCAAGAAAGATACTGCTGGGTAACATTCACGTGCTTTATA 732
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 AGCTCCGGAAGTCTAATAAGTCAAGAAAGATACTGCTGGGTAACATTCACGTGCTTTATA 809
Query 733 ATCCAAATAAAGGAGATGTGAAGCTGGGTCAGATCCGTTCACTCTGCTCAAAGGCTCACT 792
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 810 ATCCAAATCAAGGAGATGTGAAGCTGGGTCAGGTCCGTTCACTCTGCTCAAAGGCTCACT 869
Query 793 TGCTCTCTAAGAAATGGGGAGACATTCCCATTGTTCTATGCGGGGATTTCAATAGCACTC 852
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 870 TGCTCTCTAAGAAATGGGGTGACATTCCCATTGTTCTATGCGGAGATTTCAATAGCACTC 929
Query 853 CCCAGAGTCCATTGTACAACTTCTTGGCGACCTCTGAGCTGAATGTCATGGAACATGACA 912
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 930 CCAAGAGTCCATTGTACAACTTCTTGGCGTCCTCTGAGCTGAATGTCATGGAACATGACA 989
Query 913 AAAGAGAGCTCTCTGGCCAGAAAAATTGTCATCCAACCAAAGTTCTTGAGACTGGAAGCA 972
||| |||||| || |||||||||||||||| ||| |||||||||||||| ||||| ||||
Sbjct 990 AAAAAGAGCTGTCCGGCCAGAAAAATTGTCGTCCTACCAAAGTTCTTGAAACTGGTAGCA 1049
Query 973 AATCTAGTAATACAATAACTTTCAG---TT-------CT-T-GGACCAATGAAGAGATCC 1020
|||| |||||||||||||||||||| || || | |||| || ||||||||||
Sbjct 1050 AATCCAGTAATACAATAACTTTCAGAAGTTTTTGTAGCTCTTGGACAAAAGAAGAGATCC 1109
Query 1021 GAGTTGCGACCGGGCAAGAGAACTCGTACTGGGCTGTGCATCC-CTTGAAACTCAATAGC 1079
| || || |||||||||||||||||||||||||||| |||||| || |||||||||||||
Sbjct 1110 GTGTCGCAACCGGGCAAGAGAACTCGTACTGGGCTGCGCATCCTCT-GAAACTCAATAGC 1168
Query 1080 TCATACGCCTCAGTTAAGGGCTCACCAAATACCAGGGACTCTATTGGTGAACCTCTAGCA 1139
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1169 TCATACGCCTCAGTTAAGGGCTCAGCAAATACCAGGGACTCTGTTGGTGAACCTCTAGCA 1228
Query 1140 ACCTCGTATCACTCGAAATTTCTAGGAACTGTTGATTATCTTTGGTACTCTGATGGTCTT 1199
||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 1229 ACCTCATATCACTCGAAATTTCTCGGAACGGTTGATTATCTCTGGTACTCTGATGGTCTT 1288
Query 1200 GTACCTGCAGGAGTTCTTGATACACTTCCTATTGATGTTCTCTGCAAAACCAAAGGCCTT 1259
|||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1289 TTACCTGCAAGAGTTCTTGACACACTTCCTATTGATGTTCTATGCAAAACCAAAGGCCTT 1348
Query 1260 CCTTGTCAAGAATTGGGAAGCGATCACTTGGCACTTGTTTCTGAGTTTTTCTTTGAACCG 1319
|||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||
Sbjct 1349 CCTTGTCAAGAATTGGGAAGCGATCACTTGGCTCTTGTTTCTGAATTTGTCTTTGAACCG 1408
Query 1320 AACGGTTAAAGGCAT 1334
||||||||||||||
Sbjct 1409 GACGGTTAAAGGCAT 1423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66365120490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5