BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929733

Length=803
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G18518.1 | Symbols: RTFL20, DVL7 | ROTUNDIFOLIA like 20 | ch...   211    8e-54


> AT3G18518.1 | Symbols: RTFL20, DVL7 | ROTUNDIFOLIA like 20 | 
chr3:6360135-6360296 FORWARD LENGTH=162
Length=162

 Score =  211 bits (114),  Expect = 8e-54
 Identities = 132/140 (94%), Gaps = 3/140 (2%)
 Strand=Plus/Plus

Query  28   ATGAAGGAGAAGT---CGAAGGAGGAGGCAGTGAAGAATTGGGACAAGAAGAAGAACAAG  84
            |||| ||||||||   | |||||||| ||||||||||||||||| |||||||||||||||
Sbjct  1    ATGAGGGAGAAGTACACAAAGGAGGAAGCAGTGAAGAATTGGGAGAAGAAGAAGAACAAG  60

Query  85   CCTTCTTCACCAAAAGGAGTTGGAGAGTTTCTGAAAAAGAAGAAAGGAAGGTTCTACATT  144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CCTTCTTCACCAAAAGGAGTTGGAGAGTTTCTGAAAAAGAAGAAAGGAAGGTTCTACATT  120

Query  145  ATTGGGAAATGTATTACTAT  164
            ||||| ||||||||||||||
Sbjct  121  ATTGGAAAATGTATTACTAT  140



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39082166366


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5