BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929736
Length=1310
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18550.1 | Symbols: BRC1, TCP18, ATTCP18 | TCP family transc... 1742 0.0
> AT3G18550.1 | Symbols: BRC1, TCP18, ATTCP18 | TCP family transcription
factor | chr3:6383769-6385604 FORWARD LENGTH=1302
Length=1302
Score = 1742 bits (943), Expect = 0.0
Identities = 1191/1305 (91%), Gaps = 39/1305 (3%)
Strand=Plus/Plus
Query 21 ATGAACAACAACACTTTCAGTACT-CTTACCACCATCAATGACGACTACATGTTATTCCC 79
||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1 ATGAACAACAACATTTTCAGTACTAC-TACCACCATCAATGACGACTACATGTTATTCCC 59
Query 80 TTATAATGACCATAATTCCTCACAGCCATTGCTCCCTTTTAGCCCTTCTTCTTCCATTAA 139
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 60 TTATAATGACCATTATTCCTCACAACCATTGCTCCCTTTTAGCCCTTCTTCTTCCATTAA 119
Query 140 CGATATCTTGA-T---T-CA-CTC---CACATCAAAC-A--A---T---CATCATCATCA 181
||| ||||||| | | || ||| |||||||||| | | | |||||||||||
Sbjct 120 CGACATCTTGATTCACTCCACCTCTAACACATCAAACAATCATCTTGACCATCATCATCA 179
Query 182 ATTCCTACAACCTTCTCCTTTTTCTCAATTCGAATTTGTCCCGGATTGTGCCCTCCTCAC 241
||||| ||||||||||||||||||||| |||||||||| |||||| || |||||||||||
Sbjct 180 ATTCCAACAACCTTCTCCTTTTTCTCACTTCGAATTTGCCCCGGACTGCGCCCTCCTCAC 239
Query 242 CACTTTCAACCCACAAAACAATGGCCATGATGATAACCAAACCATCCCCAACGACAATCA 301
| ||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 240 CTCTTTCCACCCAGAAAACAATGGCCATGATGATAACCAAACCATCCCAAACGACAATCA 299
Query 302 TCATCCATCACTTCACTTTCCCTTGAATAACACCATTGGAGACCAGCCCGCTGAGCCCTC 361
||||||||||||||||||||||||||| |||||||||| ||| || ||| ||||||||||
Sbjct 300 TCATCCATCACTTCACTTTCCCTTGAACAACACCATTGTAGAACAACCCACTGAGCCCTC 359
Query 362 GGAAACTATAACCCACATAGAAGATTCCCAGAG------AA--TCTC-AGACCCaaaaat 412
||||||||||| || ||||||||||||||||| || |||| ||||||||||||
Sbjct 360 GGAAACTATAAACCTTATAGAAGATTCCCAGAGAATCTCAACTTCTCAAGACCCAAAAAT 419
Query 413 gaaaaaaGTCAAGAAACCAAGCAGAACGGACAGGCACAGCAAGATCAAAACGGCCAAAGG 472
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAAAAAAGCCAAGAAACCCAGCAGAACGGACAGGCACAGCAAGATCAAAACGGCCAAAGG 479
Query 473 GACAAGAGATCGTAGGATGAGACTCTCGCTAGATGTCGCCAAAGAGTTGTTTGGCTTACA 532
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GACACGAGATCGTAGGATGAGACTCTCGCTAGATGTCGCCAAAGAGTTGTTTGGCTTACA 539
Query 533 AGACATGCTTGGATTCGACAAAGCCAGCAAAACCGTTGAATGGTTGCTCACACAAGCGAA 592
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 540 AGACATGCTTGGATTTGACAAAGCCAGCAAAACCGTTGAATGGTTGCTTACACAAGCAAA 599
Query 593 ACCCGAGATAATAAAGATCGCCAAAACCCTTTCTTACCAATG-CAGCTTCAGCAGCGGCG 651
||| ||||| ||||||||||| | |||||||||| |||| || | |||||||||||||||
Sbjct 600 ACCTGAGATCATAAAGATCGCGACAACCCTTTCTCACCA-TGGCTGCTTCAGCAGCGGCG 658
Query 652 ACGAGTCTCATACCCGACCGGAGTTAAGATCCATGGACACATCATCTGATCTATGTGAAC 711
| |||||||||| |||||||| |||| |||||||||||||||| ||||||||||||||||
Sbjct 659 ATGAGTCTCATATCCGACCGGTGTTAGGATCCATGGACACATCTTCTGATCTATGTGAAC 718
Query 712 TTCCATCAATGTGGACGGTCGACGATAGAGGCAGCAATACTAACACGACCGAAACAAGAG 771
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTGCATCCATGTGGACGGTCGACGATAGAGGCAGCAATACTAACACGACCGAAACAAGAG 778
Query 772 GAAACAAGGTAGACGGTAGGTCAATGAGAGGGAAGAGAAAGAGGCCAGAACCGCGAACGC 831
|||||||||| || || || || |||||||||||||||||||||||||||||||||||||
Sbjct 779 GAAACAAGGTCGATGGGAGATCGATGAGAGGGAAGAGAAAGAGGCCAGAACCGCGAACGC 838
Query 832 CCATTTTGAAGAAGTTGTCCAAGGACGAGAGAGCGAAAGCAAGAGAAAGAGCAAAGGATA 891
||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| ||
Sbjct 839 CCATTTTAAAGAAGTTGTCCAAGGAGGAGAGAGCGAAAGCTAGAGAAAGAGCAAAGGGTA 898
Query 892 GAACAATGGAGAAAATGATGATGAAGATGAAAGGAAGATCACAGTTAGTAAAAGTTGTGG 951
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 899 GAACAATGGAGAAAATGATGATGAAGATGAAAGGAAGATCACAATTAGTGAAAGTTGTGG 958
Query 952 AAGAAGAAGCTCATCATCATGGTGAGATCATGAAGAATACTATTAGC-G--AAGTGAATC 1008
||||||| |||||| ||||||||||||| || ||||||| || ||| | |||||||||
Sbjct 959 AAGAAGACGCTCATGATCATGGTGAGATAATAAAGAATAATAATAGAAGCCAAGTGAATC 1018
Query 1009 GGAATTCTTTTGAGATGTCACACTGCGAAGACGAGATCGAAAAACTTTGCAAGAACGATC 1068
||| ||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1019 GGAGTTCTTTTGAGATGACACACTGCGAAGACAAGATCGAAGAACTTTGCAAGAACGATC 1078
Query 1069 GATTTGCAGTTTGCAACGAATTTGTCATGAATAAGAAAGATCACATTTCAAACGAATCTT 1128
| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1079 GTTTTGCAGTTTGCAACGAATTTATCATGAATAAGAAAGATCACATTTCAAATGAATCTT 1138
Query 1129 ATGACATAGTCAACTACAAATTGAACTCATCATTTCCAGTGATTAATCACCACCGCAGCC 1188
||||| |||||||||||||| |||||||||||| ||||||||||| ||||| |||||||
Sbjct 1139 ATGACTTAGTCAACTACAAACCGAACTCATCATTCCCAGTGATTAACCACCATCGCAGCC 1198
Query 1189 AAGGAGCAGCTAATTCTATTGAGCAGCATCAGTTTACGGATCTTCATAACTCCTT-GGTG 1247
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||| || |
Sbjct 1199 AAGGAGCAGCTAATTCCATTGAGCAGCATCAGTTTACGGATCTTCATTACTCCTTCGGCG 1258
Query 1248 GCGAAACCA-GA--CCTCATGTACAACTATCAAAACATGTATTGA 1289
|||||||| || ||||||| |||||||||||||||||||||||
Sbjct 1259 -CGAAACCAAGAGACCTCATGCACAACTATCAAAACATGTATTGA 1302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64457499780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5