BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929738
Length=630
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18560.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1000 0.0
> AT3G18560.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G49000.1);
Has 95 Blast hits to 95 proteins in 13 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6393910-6394785
FORWARD LENGTH=876
Length=876
Score = 1000 bits (541), Expect = 0.0
Identities = 599/628 (95%), Gaps = 0/628 (0%)
Strand=Plus/Plus
Query 1 CTTTTTCACTAACCGGAGAAATGGAGAGATCAACGCCGGAACATGTCTCCTCCGCACACA 60
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 55 CTTTTTCACTTACCGGAGAAATGGAGAGATCGACGCCGGAACATGTCTCCTCCGCACACA 114
Query 61 AGCGCCTAAGTGTGAGCTTCCTCGTATCTCTCATGGTAAATTGTGCTAGACACGCAAGCA 120
||||| |||| |||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 115 AGCGCATAAGCGTGAGCTTCCTCGTGTCTCTCATGGTACTTTGTGCTAGACACGCAAGCA 174
Query 121 GAGTTTCCAAGAAGCTTAAGCCCAAGACGTCTCGGAAGCAAACTCATCTCGAAGACTATC 180
||||||||||||||||||| ||||||| | ||||||||||||||||||| ||||||||||
Sbjct 175 GAGTTTCCAAGAAGCTTAAACCCAAGAAGACTCGGAAGCAAACTCATCTTGAAGACTATC 234
Query 181 TCGAAAGCCCTAGGTCTAACGGAAACGGTGGCGAAGACGGCAGAGGAGGAGGAAGGTTTG 240
|||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 235 TCGAAAGCCCTAAGTCTAACGGAAACGGTAGCGAAGACGGTAGAGGAGGAGGAAGGTTTG 294
Query 241 GATGGAGTCCCGCACGGACTTTTTCTCCGATGAGGGTGCGTCCTAAGGAGCTCTATACGA 300
|||||||||| ||| ||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 295 GATGGAGTCCGGCAAGGACTTTTTCTCCTATGAGGGTGCGTCCTAAGGAGCTCTACACGA 354
Query 301 CCTTGAGCAACAAGGCGATGACTATGGTTGGCCGGAAAAACAAAGCTTACAACGGTGGTC 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 355 CCTTGAGCAACAAGGCGATGACTATGGTTGGCCGGAAAAACAAAGCTTACGACGGTGGTC 414
Query 361 CGACGAAGAAGACGGCGGTGGAGATGGTGATAGAGGAGGATGAGGAAGAGTACGGCGTTT 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 415 CGACGAAGAAGACGGCGGTGGAGATGGTGATGGAGGAGGATGAGGAAGAGTACGGCGTTT 474
Query 421 GGCAGAGGGAGATTTTGATGGGAGGAAAATGTGAGCCGTTGGATTACTCCGGCGTGATCT 480
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 475 GGCAGAGGGAGATTTTGATGGGAGGAAAATGTGAGCCGTTGGATTACTCAGGCGTGATCT 534
Query 481 ACTACGATTGTAGTGGACATCAGCTAAGAGAAGTGCCTCCAAGGTCGCCACGTGCCAGTT 540
||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||
Sbjct 535 ACTACGATTGTAGTGGACATCAGCTAAAACAAGTGCCTCCAAGGTCTCCACGTGCCAGTT 594
Query 541 TGGTTCCGGAGCGCCAGACCCGTTCTTATGTTGGGTCATTGTTAAACCCGACCGGAAAAG 600
||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||| |
Sbjct 595 TGGTTCCGGAGCGCCCGACTCGTTCTTATGTCGGGTCATTGTTAAACCCGACGGGAAAGG 654
Query 601 AAATTTAAATTTTAGTTTGAGAATTTGA 628
||||||||||||||||||||||||||||
Sbjct 655 AAATTTAAATTTTAGTTTGAGAATTTGA 682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30391658935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5