BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929746
Length=2098
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18640.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 2074 0.0
> AT3G18640.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr3:6413301-6416550 REVERSE LENGTH=2517
Length=2517
Score = 2074 bits (1123), Expect = 0.0
Identities = 1402/1527 (92%), Gaps = 58/1527 (4%)
Strand=Plus/Plus
Query 601 CGAGAATGAGAAGGC-ACAGAAGCGAATTTACGGGAGAGAAGGACACACAAAGAA--GA- 656
||||||| ||||||| | |||||||| ||||||||||||||||| |||||||||| ||
Sbjct 724 CGAGAATAAGAAGGCGA-AGAAGCGAGTTTACGGGAGAGAAGGAAACACAAAGAAGGGAT 782
Query 657 GGTGGTGATGGTGAAGGAGGATTCCACAGGAGTTCGAATATTCCGTGCAAGTTTTTCGCT 716
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 783 GGTGGTGATGGTGAAGGAGGATTCCACAGGAGTTCGAATATTCCGTGTAAGTTTTTCGCT 842
Query 717 GCGGGGACGGGGTTCTGTCGTAATGGCAAGTATTGCAGGTTTTCTCATCATGTTGCTGAT 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 GCGGGGACGGGGTTCTGTCGTAATGGCAAGTATTGCAGGTTTTCTCATCATGTTGCTGAT 902
Query 777 AGAAAACAGCCTCAAG------ACAACAACTTTTATAGACAGGACAATAACAATCATAGT 830
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 903 AGAAAACAGCCTCAAGACAACAACAACAACTTTTATAGACAGGACAATAACAATCATACT 962
Query 831 AGTGGTCATAATAAATGGAATGATTTTGAAAGATTGGACAATGGAAGAGTAGGTAGAATC 890
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 963 AGTGGTCATAATAAATGGAATGATGTTGAAAGATTGGACAATGGAAGAGTAGGCGGAATC 1022
Query 891 GAAGTTTCTCGCGCCAGT---AAGGGAGTTTCTGAATCTAAAGGGAAT-G--GTAGTAGC 944
||||||||||| |||||| ||||||||||||||||||||||||||| | ||||||||
Sbjct 1023 GAAGTTTCTCGTGCCAGTAAGAAGGGAGTTTCTGAATCTAAAGGGAATGGTAGTAGTAGC 1082
Query 945 TGGATTGATGACATGGAGATGTCTCCTGATTGGAATTATGGAGTCCAAGCTTTAAAGAAG 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 TGGATTGATGACATGGAGATGTCTCCTGATTGGAATTATGGAGTCCAAGCTTTAAAGAAG 1142
Query 1005 CCTGTGAAGGAAGAACATGGTGTTGGTATTATTGGTCAGAGTTCACAATCTCGAGTTCTT 1064
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 CCTGTGAAGGAAGACCATAGTGTTGGTATTATTGGTCAGAGTTCACAATCTCGAGTTCTT 1202
Query 1065 AAAGATGATCTGGTGACTAATTATGATCAGAGAAGTAGTGGTATGTTTTCACATGGTGAC 1124
|||||||| | | | | || | ||||||||||||||||||||||||| |
Sbjct 1203 AAAGATGA-----T--C-----A-G---AG-G-AGTAGTGGTATGTTTTCACATGGTGGC 1244
Query 1125 AAAACTATGGCTGAGAAACCTATAGCTGCTTCACATCAGAGTTACAGTAATTCAGTGAAT 1184
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1245 AGAACTATGGCTGAGAAACCTGTAGCTGCTTCACATCAGAGTTACAGTAATTCAGTGAAT 1304
Query 1185 GCTGCTCCAGTTCAAACATTCAATCAGAATCATAATGTATTGCCGTACCAAAGCTCACTA 1244
| ||| |||||| |||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1305 GTTGCGCCAGTTGAAACATTCAATCAGAATCATAATGCATTACCGTACCAAAGCTCACTA 1364
Query 1245 ACTGCTGGAGGAAGTCAACAAGTGGTA---GCTGCTGCTACAAATTTCTCAGTAGGCTTG 1301
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1365 ACTGCTGGAGGAAGTCAACAAGTGCTAGCTGCTGCTGCTACAAATTTCTCAGTAGGCTCC 1424
Query 1302 AACTTGAGCAATCTTGAGAGTGGAAAAGTTTATCAAGATAATCATCACTCAACGGTGGAG 1361
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1425 AACTTGAGCAATCTTGAGAGTGGAAAAGTTTATCAAGATAATCATCACTCAACTGTGGAG 1484
Query 1362 AAACCTGTTTTGGTTCAAAATACAGTAAGCAGGGAACAAATCGATCAGATTACCAACATC 1421
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1485 AAACCTGTTTTGGTCCAAAATACAGTAAGTAGGGAACAAATCGATCAGATTACTAACATC 1544
Query 1422 TCAGCAACTATAGCGCAGTTTCTTGCAAATGGGCAGCCTATTCCACAGCTTGAACAGGCA 1481
|||||| || |||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1545 TCAGCATCTCTAGCGCAGTTTCTTGCAAATGGTCAGCCCATTCCACAGCTTGAACAGGCA 1604
Query 1482 TTACAGATGCCGCTGCATTCAGAATCTTCCATGGCTGTTCAGCCAAATCAGG---CTACT 1538
|| ||| |||| |||||||||| | || ||||||| |||||||||| |||||
Sbjct 1605 TTGCAGCTGCCTCTGCATTCAG-A------AT--CTGTTCAACCAAATCAGGCTACTACT 1655
Query 1539 CAAAGTAATCCAGTGAGAAGTAATCCAAATCAGTC-ATGGGGACTAGGGATGAGCACTGG 1597
||||||||| |||||| ||||||||||||||| | ||||||| ||||||||||||||||
Sbjct 1656 CAAAGTAATGTAGTGAGTAGTAATCCAAATCAG-CTATGGGGATTAGGGATGAGCACTGG 1714
Query 1598 TGCTGAAGGAGTCCCAGCGGTTACTGCATCAAAGGTAAGCAATGTCGTTGGGATTCAGGA 1657
|||||||||||||| |||||||||||||||||| |||||||||||| | |||||| ||
Sbjct 1715 CGCTGAAGGAGTCCCCGCGGTTACTGCATCAAAGATAAGCAATGTCGAAGAGATTCAAGA 1774
Query 1658 ACTATCGCTAAATCCCAAGGAAAACAGGGACAAAAAGAATGATGAAGCTAGCAAGGAAGA 1717
| |||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1775 AGTATCGCTAGATCCCAAGGAAAACGGGGACAAAAAGACTGATGAAGCTAGCAAGGAAGA 1834
Query 1718 AGAGGGTAGGAAAACTGGAGAAGACACTAATGATGCTGAGAATGTCGTGgatgaagat-- 1775
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1835 AGAGGGTAAGAAAACTGGAGAAGACACTAATGATGCTGAGAATGTCGTGGATGAAGATGA 1894
Query 1776 -ga---tgatgatgatgGGAGCGACGAAGAAAACAAGAAAGGGAAAGACCCGAAAGGAAT 1831
|| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1895 AGATGGTGATGATGATGGGAGCGACGAAGAGAACAAGAAAGAGAAAGACCCGAAAGGAAT 1954
Query 1832 GCGGGCATTTAAGTTTGCACTAGTTGAGGTAGTAAAGGAGCTTCTAAAACCAGCTTGGAA 1891
|||||| ||||||||||| |||||||||| ||||| |||||| ||||||||||||||||
Sbjct 1955 GCGGGCGTTTAAGTTTGCTTTAGTTGAGGTTGTAAAAGAGCTTTTAAAACCAGCTTGGAA 2014
Query 1892 AGAAGGTAAGCTGAACAAAGATGGTTACAAAAACATAGTGAAGAAGGTAGCTGAGAAAGT 1951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2015 AGAAGGTAAGCTGAACAAAGATGGTTACAAAAACATAGTGAAGAAGGTAGCTGAGAAAGT 2074
Query 1952 GACTGGTACAATGCAAAGTGAAAAGGTTCCTCAAACACAGGAGAAGATTGACCATTATCT 2011
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 2075 GACTGGTACAATGCAAAGTGGAAACGTTCCTCAAACACAGGAGAAGATTGACCATTATCT 2134
Query 2012 ATCCGCTTCGAAACCAAAACTTACCAAGCTCGTGCAGGCATATATCAGCAAAATCAAGAA 2071
|||||||||||||||||| |||||||||||||| ||||||||| || |||||||||||||
Sbjct 2135 ATCCGCTTCGAAACCAAAGCTTACCAAGCTCGTTCAGGCATATGTCGGCAAAATCAAGAA 2194
Query 2072 GACATAATTTGAATTGGACTCCCATGT 2098
||| |||| ||||||| ||||||||||
Sbjct 2195 GACCTAATATGAATTGTACTCCCATGT 2221
Score = 830 bits (449), Expect = 0.0
Identities = 538/580 (93%), Gaps = 10/580 (2%)
Strand=Plus/Plus
Query 1 TTTGGTGCTTACTAG-TGGGGATGGAAATGAGTGGTTTGGGAAGAAAACGTCTTTCAAAG 59
||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 150 TTTGGTGCTTACTAGTTGGGGATGGAAATGAGTGGTCTGGGAAGAAAACGTGTTTCAAAG 209
Query 60 TGGGACTCTAAGGAAGACACACACCATCATCATTCTAGCGTAAATGCAAACTCGGGTTCT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 210 TGGGACTCTAAGGAAGACACACACCATCATCATTCTAGCGTAAATGCAAACTCGGCTTCT 269
Query 120 TATTACCGCAACAAAGAGTCTGAGCCTGTCCGGTTCAATGCAGAGAGTAATGGTGAAGCT 179
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 270 TATTACCGCGACAAAGAGTCTGAGCCTGTCCGGTTCAATGCAGAGAGTAACGGTGAAGCT 329
Query 180 AGGACTGGAAGCAGAGTTTCACAGAATAACGATAACAGTTATTTTTCTGAACAAGATGAT 239
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 330 AGGACTAGAAGCAGAGTTTCACAGAATAACGATAACAGTTATTTTTCTGAACAAGATGGT 389
Query 240 ACAAGGCAACAATTTTTCCCTAGGAGTGCAAGTAAAAGTAATAGCAGGAGTAGAAGCCGT 299
|| |||||||| ||| ||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 390 ACTAGGCAACAGTTTGTCCGTAGGAGTGGAAGTAGAAGTAATAGCAGGAGTAGAAGCCGT 449
Query 300 AGTAGAAGCCCAGTCTATAGAGGTAGACGAGATGCGGGATCATATGATAGACACAAGACA 359
|||||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||||
Sbjct 450 AGTAGAAGCCCAGTCTATAGAGCTAGACGAGACGCGGGATCTTATGACAGACACAAGACG 509
Query 360 AGAACACAAGTTTCTCCTACGCCAATAAGGGAGTTCAATAAAAGAGGCAGTGATCATCAG 419
|||||||||||||||||||||||||| || || |||||||| ||||||||||||||| |
Sbjct 510 AGAACACAAGTTTCTCCTACGCCAATCAGAGAATTCAATAAGAGAGGCAGTGATCATTTG 569
Query 420 TTTGATCAAAG-A-A-GTGAT--T-ATGGTTGGGAAGATAACATTAGAAAGCCAAGGGAG 473
||||||||||| | | ||||| | |||||||||||||||||||||||||||| ||||||
Sbjct 570 TTTGATCAAAGCAGAAGTGATCATTATGGTTGGGAAGATAACATTAGAAAGCCGAGGGAG 629
Query 474 ACGAAGTATCACACTGAAAATTTCAGAGAAGAGGCGATGATGGAAGGTGCAATGTCTTCT 533
|| || |||||||| || |||||||||||||||| |||||||||||||||| |||||||
Sbjct 630 ACCAAATATCACACCGATGATTTCAGAGAAGAGGCAATGATGGAAGGTGCAAGGTCTTCT 689
Query 534 GACTATAATA---CTGATTATCCCGAGGATAATTCGAGAA 570
|||||||||| |||||||||||||||||||||||||||
Sbjct 690 GACTATAATAATACTGATTATCCCGAGGATAATTCGAGAA 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104015529240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5