BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929752
Length=1048
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18680.1 | Symbols: | Amino acid kinase family protein | ch... 1620 0.0
> AT3G18680.1 | Symbols: | Amino acid kinase family protein |
chr3:6427403-6429692 FORWARD LENGTH=1322
Length=1322
Score = 1620 bits (877), Expect = 0.0
Identities = 1008/1068 (94%), Gaps = 22/1068 (2%)
Strand=Plus/Plus
Query 1 TCTCTTCTTAGATCTCTCCGGCAATGGCAATTCCGTTGCCTCTCACCTCTTGCTCGCCAA 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 108 TCTCTTCTTAGATCTCTCCGGCAATGGCAATTCCGTTGCCTCTTACCTCTTGCTCCCCAA 167
Query 61 TCTCAACTTCTTCTTCTATTTCCCGAACCTCCTTCGTCCCTCTCACACCTCGCAATCGTA 120
||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 168 TCTCAACTTCTTCGTCTATTTCCCGAACCTCCTTCGTCCCTCTTACACTTCGCAATCGTA 227
Query 121 CTTTCTTCTCCAACCAGAATTGCAGCAGGCGTGTACTTATCAGCTG--C-TCTTC----T 173
||||||||||||||||||||| ||| |||||||||||||||||||| | ||||| |
Sbjct 228 CTTTCTTCTCCAACCAGAATTACAGTAGGCGTGTACTTATCAGCTGCTCTTCTTCTTTGT 287
Query 174 --TCAGACAATGGTTCATCTCCAGATTCCATGAACGG-AA---G--CGGGAACGGGAGTA 225
||||||||||||||||||||||| ||||||||||| || | ||||||||||||||
Sbjct 288 CCTCAGACAATGGTTCATCTCCAGACTCCATGAACGGAAACGGGAACGGGAACGGGAGTA 347
Query 226 GCTTAAACGGGCAGA-CATCTTTTCCACGAATGCCTTCCTTTGATGGAGCATCCAAACCA 284
||||||||||||| | ||||||| |||||| ||||||||||||||||| |||||||||||
Sbjct 348 GCTTAAACGGGCA-ATCATCTTTCCCACGACTGCCTTCCTTTGATGGAACATCCAAACCA 406
Query 285 CCGCTTAAATGGAGAAGGGTTTTACTCAAAGTCAGTGGAGAAGCTCTTGCTGGAGACGAG 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 CCGCTTAAATGGAGAAGGGTTTTACTCAAAGTCAGTGGAGAAGCTCTTGCTGGAGACGAG 466
Query 345 GAACAAAATATCGATCCAAAGGTTACTATGGCGATTGCAAGGGAAGTTGCAGCAGTGACT 404
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 GAGCAAAATATCGACCCAAAGGTTACTATGGCGATTGCAAGGGAAGTTGCAGCAGTGACT 526
Query 405 CGACTTGGCATTGAGGTTGCAATTGTTGTTGGAGGAGGAAATATCTTTCGTGGATCTACC 464
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 527 CGACTTGGCATTGAGGTTGCTATAGTTGTTGGAGGAGGAAATATCTTTCGTGGATCTACC 586
Query 465 TGGGCTGGGTGCAGTGGCCTTGATCGCTCCTCTGCTGATTATATTGGGATGCTGGCAACT 524
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 587 TGGGCTGGGTGCAGTGGCCTTGATCGCTCCTCTGCTGATTATATCGGGATGCTGGCAACT 646
Query 525 GTGATGAATGCAATATTTCTTCAAGCAACAATGGAGAGTATTGGCATCCCAACCCGTGTT 584
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 647 GTGATGAATGCAATATTTCTTCAAGCGACAATGGAGAGTATTGGCATCCCAACCCGTGTT 706
Query 585 CAAACCGCTTTCCGCATGTCAGAAGTAGCAGAGCCTTACATAAGAAGACGAGCAATTAGG 644
||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 707 CAAACTGCTTTCCGCATGTCGGAAGTCGCAGAGCCTTACATAAGAAGACGAGCAATCAGA 766
Query 645 CATCTAGAAAAAGGAAGGGTTGTTATATTTGCAGCTGGAACAGGCAATCCATTTTTCACC 704
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 767 CATCTAGAAAAAGGAAGGGTTGTAATATTTGCAGCTGGAACAGGCAATCCATTTTTCACC 826
Query 705 ACCGATACTGCAGCAGCTCTTCGATGTGCTGAAATTAATGCAGAAGTAGTGCTGAAAGCA 764
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 ACCGATACTGCAGCGGCTCTTCGATGTGCTGAAATTAATGCAGAAGTAGTGCTGAAAGCA 886
Query 765 ACAAATGTTGATGGAGTGTTCGACGATGATCCTAAAAGAAACCCAAACGCTCGCCTTCTC 824
|||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 887 ACAAATGTTGATGGCGTGTTCGACGATGATCCTAAAAGAAACCCAAACGCTCGTCTGCTT 946
Query 825 GACTCACTAACTTACCAAGAAGTAACCTCAAAGGACCTCTCTGTAATGGATATGACTGCT 884
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 947 GACTCACTAACTTACCAAGAGGTCACCTCAAAGGACCTCTCTGTAATGGATATGACTGCT 1006
Query 885 ATCACTTTGTGCCAAGAAAATAACATCCCAGTTGTGGTATTCAATCTATCGGAACCTGGA 944
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1007 ATCACTTTGTGCCAAGAAAATAACATCCCAGTTGTGGTATTCAATCTTTCGGAACCTGGG 1066
Query 945 AACATCGCAAAAGCAATCAAAGGAGAGAGAGTCGGTACATTGATAGGAGGAACTTGGAAC 1004
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1067 AACATCGCCAAAGCAATCAAAGGAGAGAGAGTTGGTACATTGATAGGAGGAACTTGGAAC 1126
Query 1005 TCTATTGTTACAACTAC-TACATGAAGGATC-T-T-CTCAAAACACAA 1048
|| ||||||||||| || | ||||||| | | | | ||||||||||||
Sbjct 1127 TCCATTGTTACAACAACCT-CATGAAGAAGCCTATTCTCAAAACACAA 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51389532381
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5