BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929753
Length=691
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18690.1 | Symbols: MKS1 | MAP kinase substrate 1 | chr3:642... 968 0.0
> AT3G18690.1 | Symbols: MKS1 | MAP kinase substrate 1 | chr3:6429534-6430514
REVERSE LENGTH=981
Length=981
Score = 968 bits (524), Expect = 0.0
Identities = 619/662 (94%), Gaps = 17/662 (3%)
Strand=Plus/Plus
Query 21 ATGGATCCGTCGGAGTATTTTGCCGGCGGCAATCCTTCTGACCAACAGAACCAGAAGCGG 80
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 92 ATGGATCCGTCGGAGTATTTTGCCGGCGGCAATCCTTCCGATCAACAGAACCAGAAGCGG 151
Query 81 CAGCTTCAGATCTGTGGTCCTCGTCCTTCACCTCTTAGTGTCCACAAAGACTCTCACAAA 140
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 152 CAGCTTCAGATCTGTGGTCCTCGTCCTTCACCTCTTAGTGTTCACAAAGACTCTCACAAA 211
Query 141 ATCAAGAAACCTCCAAAACACCCTGCGCCGCCGCCAAATCGTGACCAACCTCCGCCGTAT 200
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 212 ATCAAGAAACCTCCAAAACACCCTGCGCCGCCGCCAAATCGTGACCAACCGCCGCCGTAT 271
Query 201 ATTCCTAGAGAGCCGGTGGTTATCTACGCCGTATCCCCCAAGGTTGTACACGCCACCGCG 260
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 272 ATTCCTAGAGAGCCGGTGGTTATCTACGCCGTATCCCCCAAGGTTGTACACGCAACCGCG 331
Query 261 TCGGAGTTCATGAACGTCGTCCAGCGACTCACAGGGATCTCCTCTGGAGTTTTCCTCGAA 320
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 332 TCTGAGTTCATGAACGTAGTCCAGCGACTCACAGGGATCTCCTCTGGTGTTTTCCTCGAA 391
Query 321 TCTGGCGGCGGTGGAGATGTTTCACCGGCGGCGAGGCTAGCGTCGACGGAGAATGCTAGT 380
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 392 TCTGGCGGCGGTGGAGATGTTTCACCGGCGGCGAGGCTAGCGTCCACGGAAAATGCTAGT 451
Query 381 CCAAGAGGAGGAAAAGAACCGGCTGCGAGAAATGAGACGGTAGAAATCA-C-----TATG 434
|||||||||||||||||||||||||||||| |||||||||| ||||||| | ||||
Sbjct 452 CCAAGAGGAGGAAAAGAACCGGCTGCGAGAGATGAGACGGTGGAAATCAACACGGCTATG 511
Query 435 GAAGAAGCAGCTGAATTTGGTGGTTATGCTCCGGGAATACTCTCGCCATCTCCGGCGATG 494
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 512 GAAGAAGCAGCTGAATTTGGTGGTTATGCTCCGGGAATACTCTCGCCATCTCCGGCCTTG 571
Query 495 TTAGC-AACAGCTTCTGCCGGGATATTCTCTCCGATGTATCATCAAGGTGGGATGTTTTC 553
|| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 TT-GCCAACAGCTTCTACCGGGATATTCTCTCCGATGTATCATCAAGGTGGGATGTTTTC 630
Query 554 GCCGGCTATACCACCGGGATTATTCTCGCCGGCGGGATTAATG------TAT--A-GTCC 604
|||||||||||||| |||||||||||||||||||||||| ||| | | | ||||
Sbjct 631 GCCGGCTATACCACTGGGATTATTCTCGCCGGCGGGATTTATGAGCCCGTTTCGAAGTCC 690
Query 605 TGGTTTTGCTAGTTTGGTCGCTTCTCCAACATTTGCTGATGTCTTTAGAAATATTTGGGA 664
||| ||| |||||||||| ||||| ||||| ||||||||| ||||||| ||||||||||
Sbjct 691 TGGCTTTACTAGTTTGGTAGCTTCACCAACTTTTGCTGATTTCTTTAGTCATATTTGGGA 750
Query 665 TC 666
||
Sbjct 751 TC 752
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33455941902
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5