BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929757
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18715.1 | Symbols: IDL4 | inflorescence deficient in abscis... 401 2e-111
> AT3G18715.1 | Symbols: IDL4 | inflorescence deficient in abscission
(IDA)-like 4 | chr3:6441067-6441348 FORWARD LENGTH=282
Length=282
Score = 401 bits (217), Expect = 2e-111
Identities = 261/282 (93%), Gaps = 3/282 (1%)
Strand=Plus/Plus
Query 21 ATGTATCCTACAAGTCCACATCATTGGAGAAAAAGATTATTAATAAA-C--AAACACGCT 77
|||||||||||| |||||||| ||||||||| |||||||| |||||| | ||| |||
Sbjct 1 ATGTATCCTACACGTCCACATTATTGGAGAAGAAGATTATCAATAAACCGGCCACAAGCT 60
Query 78 CTTCTTCTTTTGATTCTCTGCCTCTTCTTCATTCACCACTGCGACGCCTCGAGATTCTCG 137
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTCTTCTTTTGATTCTCTGCCTCTTCTTCATTCACCACTGCGACGCCTCGAGATTCTCG 120
Query 138 TCATCAAGCGTTTTCTACAGAAACCCTAATTATGATCACAACAATAACTCGATGAGGAGA 197
|||||||||||||||||||||||||||||||||||||| | ||||||| || || |||||
Sbjct 121 TCATCAAGCGTTTTCTACAGAAACCCTAATTATGATCATAGCAATAACACGGTGCGGAGA 180
Query 198 GGCCATTTCTTAGGATTCTTGCCAAGACACTTGCCAGTTCCAGCTTCTGCTCCTTCACGA 257
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 181 GGCCATTTCTTAGGATTCTTGCCAAGACATTTACCTGTTCCAGCTTCTGCTCCTTCACGA 240
Query 258 AAACACAACGACGTTGGTATTCAAGCCTTGTTGTCTCCATGA 299
|||||||||||| ||||||||||||||||||||||||| |||
Sbjct 241 AAACACAACGACATTGGTATTCAAGCCTTGTTGTCTCCTTGA 282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14828985955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5