BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929758
Length=878
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18720.1 | Symbols: | F-box family protein | chr3:6444367-6... 363 2e-99
> AT3G18720.1 | Symbols: | F-box family protein | chr3:6444367-6445759
REVERSE LENGTH=1217
Length=1217
Score = 363 bits (196), Expect = 2e-99
Identities = 426/533 (80%), Gaps = 32/533 (6%)
Strand=Plus/Plus
Query 215 CCGCTCCCACATCAGCTAGTTGTTGCGTTATCTCCTTCGCCCATCAACAAAATT-TGGAC 273
|||||||||||||| ||||||||||||| || |||||| ||| |||| | || | ||
Sbjct 553 CCGCTCCCACATCAACTAGTTGTTGCGTCATATCCTTCACCCCTCAA-AGTTTTCTTTAC 611
Query 274 GTATTTGTT-GTGCTTGATACTTGGCGCCCTGGTGATTCTGTATGGACCACTCGTCGC-T 331
| | ||||| | |||||||||||||||||||||| || ||||||||||||| || | |
Sbjct 612 GCAGTTGTTAAAG-TTGATACTTGGCGCCCTGGTGAATCCGTATGGACCACTCATCACTT 670
Query 332 T--TCCGAATCGGTCTTATGGTTACGG-AA-CAGTAAAATGCCA-CTTCTCCAATGGTAT 386
| || || | | ||| ||| | || || || | | ||| | |||||||||||||||
Sbjct 671 TGATCAAAAGC-G--TTACGGTGA-GGTAATCAAT-AGATG-TATCTTCTCCAATGGTAT 724
Query 387 GTTCTATTGTCTCAGTACCAGCGGCTACATCGGGGTTTTCGAGCCC-TCTGGAGCAACCT 445
||||||||||||||||||||| ||| | || ||||||||| ||| ||| ||| |||||
Sbjct 725 GTTCTATTGTCTCAGTACCAGTGGCCGCCTCTCGGTTTTCGA-CCCGTCTAGAGAAACCT 783
Query 446 GGAATATTATTCCAGTCAACCCCTGTCCCGTCTTTAGTCGTCGTCATCACGATAAGCTCG 505
||||| || ||||||| || || |||| | |||| |||||| | | || ||| |
Sbjct 784 GGAATGTTCTTCCAGTGAAACCATGTCGGGCCTTT---CGTCGTAAA-ATTAT--GCTTG 837
Query 506 TGAGGCCAGTGTTCATGACAGAGCATGAAGGAGACAT-TTATGTTATGACTACACGCCGC 564
|||||| ||| |||||||||||||||||||||||||| || |||| ||||||||||||||
Sbjct 838 TGAGGCAAGTATTCATGACAGAGCATGAAGGAGACATCTT-TGTTGTGACTACACGCCGC 896
Query 565 AAAAACAACAGCAAACAGTTGGTGTTTAAATTAAACCTTGAACGCAATGTATGGGAAGAG 624
||||||||| |||| ||||| |||||| |||||||| || ||||||| |||||||||
Sbjct 897 GTAAACAACAGAAAACTGTTGGCCTTTAAACTAAACCTTCAAGGCAATGTGTGGGAAGAG 956
Query 625 ATGAGAGGACTTGGTGGATTGACAGTATTTGCATGTCACGCTGCCTCTTTGACAAGAGCT 684
|||| || || | ||| |||||||||||| || || ||||| ||||||| |||||||||
Sbjct 957 ATGAAAGTACCTAATGGCTTGACAGTATTTTCAAGTGACGCTACCTCTTTAACAAGAGCT 1016
Query 685 GGTCTCTC-AGCGGAGGAGAGGAACAGAATCTATA--CATCGCATATCGGTGA 734
||||| || || |||||||||||||| |||||| ||||| |||||| |||
Sbjct 1017 GGTCT-TCCAGAGGAGGAGAGGAACAT--TCTATATTCATCGGATATCGATGA 1066
Score = 198 bits (107), Expect = 7e-50
Identities = 147/165 (89%), Gaps = 8/165 (5%)
Strand=Plus/Plus
Query 57 TCCGCCGATCCCTGAATTCCTCACGGCGAGGCCCATAGTTCAAGCGCTTCCAGCGTCAGC 116
|||||||||| |||||| ||||||||||||| |||| ||||| |||||||| ||||||||
Sbjct 32 TCCGCCGATCGCTGAATCCCTCACGGCGAGGTCCATTGTTCAGGCGCTTCCGGCGTCAGC 91
Query 117 GACAAGATCAGGAAATGGTGGATC--AG-AGAAGAAGAAC--TG-T-ATCAGAGGATTGT 169
|||| |||||||||||||||| | || ||||||||||| || | || ||||||||||
Sbjct 92 CACAATATCAGGAAATGGTGGACCAAAGAAGAAGAAGAACTGTGTTAAT-AGAGGATTGT 150
Query 170 GGGATAAAAAGATTCCGACGGATCTGCTGCAAGAGATACTGTCTC 214
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 151 GGGATAAACAGATTCCGACGGATCTGCTGCAAGAGATACTGTCTC 195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42849727391
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5