BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929762

Length=461
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G18760.1 | Symbols:  | Translation elongation  factor EF1B/r...   678    0.0  


> AT3G18760.1 | Symbols:  | Translation elongation  factor EF1B/ribosomal 
protein S6 family protein | chr3:6457690-6459627 
REVERSE LENGTH=729
Length=729

 Score =  678 bits (367),  Expect = 0.0
 Identities = 432/463 (93%), Gaps = 5/463 (1%)
 Strand=Plus/Plus

Query  1    GAAGGAAGAAGAAGAT-AAAAATGCCGCTCTACGACTGTATGCTTTTGTTCAAGCCAATA  59
            |||||||||||  ||| |||||||||||||||||||||||||||| |||||||||| |||
Sbjct  51   GAAGGAAGAAG--GATCAAAAATGCCGCTCTACGACTGTATGCTTCTGTTCAAGCCTATA  108

Query  60   ATCAGGAAGGAAGGCCTCATCGATCTCGTTGCGCGCATCGGGAAACATGTTTACAGTAGA  119
            ||||||||||| ||||||||||| |||||||||||||| || ||||| |||||||| |||
Sbjct  109  ATCAGGAAGGAGGGCCTCATCGACCTCGTTGCGCGCATTGGTAAACACGTTTACAGCAGA  168

Query  120  AATGGCGTCCTCACTGAGATCAAATCCTTTGGCAAGGTCGAATTGGGTTACGGTATTAGG  179
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  169  AATGGCGTCCTCACCGAGATCAAATCCTTTGGCAAGGTCGAATTGGGTTACGGTATTAGA  228

Query  180  AAGCTCGACGGAAGACACTACCAGGGACAATTGATGCAGATAACAATGATGACAACTCCA  239
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  229  AAGCTCGACGGAAGACACTATCAGGGACAATTGATGCAGATAACAATGATGACAACTCCA  288

Query  240  AACATGAACAAGGAGCTTCACTACCTCAACAAGGAAGACAAACTGCTGCGCTGGCTCCTA  299
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct  289  AACATGAACAAGGAGCTTCACTACCTGAACAAGGAAGACAAACTGCTGCGCTGGCTCTTA  348

Query  300  GTTAAACACCGCGACATCAAGATTGGACAATCGGAAAAGGAAGATAGTCTGACCGAGCCT  359
            ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | ||||
Sbjct  349  GTTAAACACCGTGACATCAAGATTGGACAGTCGGAAAAGGAAGATAGTCTGACTGTGCCT  408

Query  360  AACAGACTTACTACTGAGAGCTTATATGATA-ATTCCTCCTCGGACGAAGACGACGACAA  418
            |||||||| |||| || |||||||||||||  || |||||||||||||||| ||| ||||
Sbjct  409  AACAGACTCACTAGTGGGAGCTTATATGATGGAT-CCTCCTCGGACGAAGATGACAACAA  467

Query  419  CATTCTAGGGTTATCACGATGAGAAAATCATTTTCTTTGAAAT  461
            |||| |||||||||||||||||| |||||| ||||||||||||
Sbjct  468  CATTTTAGGGTTATCACGATGAGGAAATCAATTTCTTTGAAAT  510



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21967006313


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5