BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929765
Length=696
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18773.1 | Symbols: | RING/U-box superfamily protein | chr3... 1092 0.0
AT1G49210.1 | Symbols: | RING/U-box superfamily protein | chr1... 412 2e-114
> AT3G18773.1 | Symbols: | RING/U-box superfamily protein | chr3:6465825-6467175
FORWARD LENGTH=1351
Length=1351
Score = 1092 bits (591), Expect = 0.0
Identities = 656/688 (95%), Gaps = 2/688 (0%)
Strand=Plus/Plus
Query 1 AAAGC-TTTTTATAGAGTAAAAGATGATTTCAGATCAGTTACCTTCTTCTTCATCTCAAG 59
||||| |||||||||||| ||||||| ||||||| || ||||||||||||||||||||||
Sbjct 458 AAAGCTTTTTTATAGAGT-AAAGATGTTTTCAGAGCACTTACCTTCTTCTTCATCTCAAG 516
Query 60 TCTTCCAGGACCACTTCATCGACAGTTTCGTCTCCAGAAAATTGCTTCAGCAGATCCCAT 119
| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 TTTTCCAAGAACACTTCATCGACAGTTTCGTCTCCAGAAAATTGCTTCAGCAGATCCCAT 576
Query 120 TTGCTCACAACGCTCAACAAGCTCATGTACCTGATAAGAACAACTTGAGCGGCAATATTC 179
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 577 TTGCCCACAACGCTCAACAAGCTCATGTACCTGATAAGAACAACTTGAGCGGCAATGTTC 636
Query 180 TCATGCTGCTCTCTATCCTTTTGTGCGGTATCATCTGCTCCCTCGGGTTGCATTACATAA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 TCATGCTGCTCTCTATCCTTTTGTGCGGTATCATCTGCTCCCTCGGGTTGCATTACATAA 696
Query 240 TACGTTGCGCATTCAGACGTTCTCGAAGTTTTATGATCTCTGATCCCATCTCTATCCCAT 299
||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 697 TACGTTGTGCATTTATACGTTCTCGAAGTTTCATGATCTCTGATCCCATCTCTATCCCAT 756
Query 300 CCACACCAAGAGATTCATCAGCAAACAAAGGGATCAAGAAGAAAGCTCTCAAGATGTTCC 359
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 757 CCACACCAAGAGATTCATCAGTAAACAAAGGGATCAAGAAGAAAGCTCTCAAGATGTTAC 816
Query 360 CAGTTGTGAATTACTCACCTGAGATTAACCAGCCAGGGCTTGGTGAAGAGTGTGTCATCT 419
|||||||||||||||||||||| ||||||| ||||||| | |||||||||||||||||||
Sbjct 817 CAGTTGTGAATTACTCACCTGAAATTAACCTGCCAGGGGTCGGTGAAGAGTGTGTCATCT 876
Query 420 GCTTGTCTGATTTTGTTGCTGAAGAACAGCTACGTCTGCTTCCCAAGTGTAACCACGGGT 479
||||||||||||||||||||| ||||||||||||| | ||||||||||| ||||| || |
Sbjct 877 GCTTGTCTGATTTTGTTGCTGGAGAACAGCTACGTGTACTTCCCAAGTGCAACCATGGAT 936
Query 480 TCCACGTTCGCTGCATCGACAAATGGCTTACGCAACATATGACTTGTCCGAAATGCAGAC 539
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 TCCACCTTCGCTGCATCGACAAATGGCTTACGCAACATATGACTTGTCCGAAATGCAGAC 996
Query 540 ACTGTCTGGTTGATACATGCCAAAAGGTCTTAAGTGACTGCGATGCAGCTGATCAAGTGG 599
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 997 ACTGTCTGGTTGATACATGCCAAAAAGTCTTAAGTGACTGCGATGCAGCTGATCAAGTGG 1056
Query 600 CAGCAACATCAACGGAGAGCATAGATATCAGAATTGCTCCTCTAGAACCTGAAGCAAGAG 659
|||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1057 CAGCGACAGCAACGGAGAGCATAGATATCAGAATTTCTCCTCTAGAACCTGAAGCAAGAG 1116
Query 660 TAGCCACTTTTAGATAAAGCAGCTAGAG 687
|||||||||||||| |||||||||||||
Sbjct 1117 TAGCCACTTTTAGAGAAAGCAGCTAGAG 1144
> AT1G49210.1 | Symbols: | RING/U-box superfamily protein | chr1:18201889-18202764
FORWARD LENGTH=876
Length=876
Score = 412 bits (223), Expect = 2e-114
Identities = 439/541 (81%), Gaps = 23/541 (4%)
Strand=Plus/Plus
Query 156 AGAACAACTTGAGCGGCAATATTCTCATGCTGCTCTCTA-TCCTTTTGTGCGGTATCATC 214
|||||||| | | || ||| |||| ||||| ||||| | | || | || || ||||||
Sbjct 257 AGAACAACCTCAAAGGGAATGTTCTGATGCTTCTCTC-AGTTCTCATCTGTGGCATCATC 315
Query 215 TGCTCCCTCGGGTTGCATTACATAATACGTTGCGCATTCAGACGTTC-TCGAAGTTTTAT 273
|| | ||| ||||| |||||||| || || || |||||||||||||| || | |||| ||
Sbjct 316 TGTTGCCTTGGGTTACATTACATCATTCGCTGTGCATTCAGACGTTCTTC-ACGTTTCAT 374
Query 274 GATCTCTGATCCCATCTCTA-TCCCATCCACACCAAG-AGATTCATCAGCAAACAAAGGG 331
||||||||| || || || | | | || |||||| | || ||||| ||||||||||
Sbjct 375 GATCTCTGAGCCTATATCCAGT-CTTTCAACACCACGAAG-TTCAT---CAAACAAAGGA 429
Query 332 ATCAAGAAGAAAGCTCTCAAGATGTTCCCAGTTGTGAATTACTCACCTGAGATTAACCAG 391
||||||||||||||||| | |||||||||||| |||| |||||||| |||||| ||| |
Sbjct 430 ATCAAGAAGAAAGCTCTGAGGATGTTCCCAGTCGTGAGTTACTCACGTGAGATGAACTTG 489
Query 392 CCAGGGCTTGGTGAAGAGTGTGTCATCTGCTTGTCTGATTTTGTTGCTGAAGAACAGCTA 451
|| ||| ||||||||||||||||||| || ||||| ||||||||| ||| ||||||||
Sbjct 490 CCCGGGATTGGTGAAGAGTGTGTCATTTGTTTGTCGGATTTTGTTTCTGGTGAACAGCT- 548
Query 452 C-GTCTGCTTCCCAAGTGTAACCACGGGTTCCACGTTCGCTGCATCGACAAATGGCTTAC 510
| | ||||| |||||||| || || |||||||| ||||| ||||| ||||| |||||| |
Sbjct 549 CAGGCTGCTCCCCAAGTGCAATCATGGGTTCCATGTTCGTTGCATAGACAAGTGGCTT-C 607
Query 511 -GCAACATATGACTTGTCCGAAATGCAGACACTGTCTGGTTGATACATGCCAAAAGGTCT 569
|| ||| |||| ||||||||||||||||||||||||||||| ||||| |||||| | |
Sbjct 608 AACATCATTTGACATGTCCGAAATGCAGACACTGTCTGGTTGAGACATGTCAAAAGATAT 667
Query 570 TAAGTGACTGC-GATGCA-GCTGAT-CAAGTGGCAGCAACATCAACGGAGAGCATAGATA 626
|| |||||| | | | || |||||| ||| ||||| ||||| |||| |||||| || ||
Sbjct 668 TAGGTGACTTCAG-T-CAAGCTGATTCAA-TGGCATCAACACCAACAGAGAGCGTA-ATT 723
Query 627 -TCAGAATTGCTCCTCTAGAACCTGAAGCAAGAGTAGCCACTTTTAGATAAAGCAGCTAG 685
|||| |||| ||||||||||||||||| ||||||| |||||||||| |||||||||||
Sbjct 724 GTCAGGATTGATCCTCTAGAACCTGAAGGAAGAGTAAACACTTTTAGAGAAAGCAGCTAG 783
Query 686 A 686
|
Sbjct 784 A 784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33707112637
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5