BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg929765 Length=696 Score E Sequences producing significant alignments: (Bits) Value AT3G18773.1 | Symbols: | RING/U-box superfamily protein | chr3... 1092 0.0 AT1G49210.1 | Symbols: | RING/U-box superfamily protein | chr1... 412 2e-114 > AT3G18773.1 | Symbols: | RING/U-box superfamily protein | chr3:6465825-6467175 FORWARD LENGTH=1351 Length=1351 Score = 1092 bits (591), Expect = 0.0 Identities = 656/688 (95%), Gaps = 2/688 (0%) Strand=Plus/Plus Query 1 AAAGC-TTTTTATAGAGTAAAAGATGATTTCAGATCAGTTACCTTCTTCTTCATCTCAAG 59 ||||| |||||||||||| ||||||| ||||||| || |||||||||||||||||||||| Sbjct 458 AAAGCTTTTTTATAGAGT-AAAGATGTTTTCAGAGCACTTACCTTCTTCTTCATCTCAAG 516 Query 60 TCTTCCAGGACCACTTCATCGACAGTTTCGTCTCCAGAAAATTGCTTCAGCAGATCCCAT 119 | ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 517 TTTTCCAAGAACACTTCATCGACAGTTTCGTCTCCAGAAAATTGCTTCAGCAGATCCCAT 576 Query 120 TTGCTCACAACGCTCAACAAGCTCATGTACCTGATAAGAACAACTTGAGCGGCAATATTC 179 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 577 TTGCCCACAACGCTCAACAAGCTCATGTACCTGATAAGAACAACTTGAGCGGCAATGTTC 636 Query 180 TCATGCTGCTCTCTATCCTTTTGTGCGGTATCATCTGCTCCCTCGGGTTGCATTACATAA 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 637 TCATGCTGCTCTCTATCCTTTTGTGCGGTATCATCTGCTCCCTCGGGTTGCATTACATAA 696 Query 240 TACGTTGCGCATTCAGACGTTCTCGAAGTTTTATGATCTCTGATCCCATCTCTATCCCAT 299 ||||||| ||||| | ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 697 TACGTTGTGCATTTATACGTTCTCGAAGTTTCATGATCTCTGATCCCATCTCTATCCCAT 756 Query 300 CCACACCAAGAGATTCATCAGCAAACAAAGGGATCAAGAAGAAAGCTCTCAAGATGTTCC 359 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 757 CCACACCAAGAGATTCATCAGTAAACAAAGGGATCAAGAAGAAAGCTCTCAAGATGTTAC 816 Query 360 CAGTTGTGAATTACTCACCTGAGATTAACCAGCCAGGGCTTGGTGAAGAGTGTGTCATCT 419 |||||||||||||||||||||| ||||||| ||||||| | ||||||||||||||||||| Sbjct 817 CAGTTGTGAATTACTCACCTGAAATTAACCTGCCAGGGGTCGGTGAAGAGTGTGTCATCT 876 Query 420 GCTTGTCTGATTTTGTTGCTGAAGAACAGCTACGTCTGCTTCCCAAGTGTAACCACGGGT 479 ||||||||||||||||||||| ||||||||||||| | ||||||||||| ||||| || | Sbjct 877 GCTTGTCTGATTTTGTTGCTGGAGAACAGCTACGTGTACTTCCCAAGTGCAACCATGGAT 936 Query 480 TCCACGTTCGCTGCATCGACAAATGGCTTACGCAACATATGACTTGTCCGAAATGCAGAC 539 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 937 TCCACCTTCGCTGCATCGACAAATGGCTTACGCAACATATGACTTGTCCGAAATGCAGAC 996 Query 540 ACTGTCTGGTTGATACATGCCAAAAGGTCTTAAGTGACTGCGATGCAGCTGATCAAGTGG 599 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 997 ACTGTCTGGTTGATACATGCCAAAAAGTCTTAAGTGACTGCGATGCAGCTGATCAAGTGG 1056 Query 600 CAGCAACATCAACGGAGAGCATAGATATCAGAATTGCTCCTCTAGAACCTGAAGCAAGAG 659 |||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1057 CAGCGACAGCAACGGAGAGCATAGATATCAGAATTTCTCCTCTAGAACCTGAAGCAAGAG 1116 Query 660 TAGCCACTTTTAGATAAAGCAGCTAGAG 687 |||||||||||||| ||||||||||||| Sbjct 1117 TAGCCACTTTTAGAGAAAGCAGCTAGAG 1144 > AT1G49210.1 | Symbols: | RING/U-box superfamily protein | chr1:18201889-18202764 FORWARD LENGTH=876 Length=876 Score = 412 bits (223), Expect = 2e-114 Identities = 439/541 (81%), Gaps = 23/541 (4%) Strand=Plus/Plus Query 156 AGAACAACTTGAGCGGCAATATTCTCATGCTGCTCTCTA-TCCTTTTGTGCGGTATCATC 214 |||||||| | | || ||| |||| ||||| ||||| | | || | || || |||||| Sbjct 257 AGAACAACCTCAAAGGGAATGTTCTGATGCTTCTCTC-AGTTCTCATCTGTGGCATCATC 315 Query 215 TGCTCCCTCGGGTTGCATTACATAATACGTTGCGCATTCAGACGTTC-TCGAAGTTTTAT 273 || | ||| ||||| |||||||| || || || |||||||||||||| || | |||| || Sbjct 316 TGTTGCCTTGGGTTACATTACATCATTCGCTGTGCATTCAGACGTTCTTC-ACGTTTCAT 374 Query 274 GATCTCTGATCCCATCTCTA-TCCCATCCACACCAAG-AGATTCATCAGCAAACAAAGGG 331 ||||||||| || || || | | | || |||||| | || ||||| |||||||||| Sbjct 375 GATCTCTGAGCCTATATCCAGT-CTTTCAACACCACGAAG-TTCAT---CAAACAAAGGA 429 Query 332 ATCAAGAAGAAAGCTCTCAAGATGTTCCCAGTTGTGAATTACTCACCTGAGATTAACCAG 391 ||||||||||||||||| | |||||||||||| |||| |||||||| |||||| ||| | Sbjct 430 ATCAAGAAGAAAGCTCTGAGGATGTTCCCAGTCGTGAGTTACTCACGTGAGATGAACTTG 489 Query 392 CCAGGGCTTGGTGAAGAGTGTGTCATCTGCTTGTCTGATTTTGTTGCTGAAGAACAGCTA 451 || ||| ||||||||||||||||||| || ||||| ||||||||| ||| |||||||| Sbjct 490 CCCGGGATTGGTGAAGAGTGTGTCATTTGTTTGTCGGATTTTGTTTCTGGTGAACAGCT- 548 Query 452 C-GTCTGCTTCCCAAGTGTAACCACGGGTTCCACGTTCGCTGCATCGACAAATGGCTTAC 510 | | ||||| |||||||| || || |||||||| ||||| ||||| ||||| |||||| | Sbjct 549 CAGGCTGCTCCCCAAGTGCAATCATGGGTTCCATGTTCGTTGCATAGACAAGTGGCTT-C 607 Query 511 -GCAACATATGACTTGTCCGAAATGCAGACACTGTCTGGTTGATACATGCCAAAAGGTCT 569 || ||| |||| ||||||||||||||||||||||||||||| ||||| |||||| | | Sbjct 608 AACATCATTTGACATGTCCGAAATGCAGACACTGTCTGGTTGAGACATGTCAAAAGATAT 667 Query 570 TAAGTGACTGC-GATGCA-GCTGAT-CAAGTGGCAGCAACATCAACGGAGAGCATAGATA 626 || |||||| | | | || |||||| ||| ||||| ||||| |||| |||||| || || Sbjct 668 TAGGTGACTTCAG-T-CAAGCTGATTCAA-TGGCATCAACACCAACAGAGAGCGTA-ATT 723 Query 627 -TCAGAATTGCTCCTCTAGAACCTGAAGCAAGAGTAGCCACTTTTAGATAAAGCAGCTAG 685 |||| |||| ||||||||||||||||| ||||||| |||||||||| ||||||||||| Sbjct 724 GTCAGGATTGATCCTCTAGAACCTGAAGGAAGAGTAAACACTTTTAGAGAAAGCAGCTAG 783 Query 686 A 686 | Sbjct 784 A 784 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33707112637 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5