BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929770
Length=2131
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18810.1 | Symbols: | Protein kinase superfamily protein | ... 3190 0.0
AT1G49270.1 | Symbols: | Protein kinase superfamily protein | ... 861 0.0
> AT3G18810.1 | Symbols: | Protein kinase superfamily protein
| chr3:6480701-6483593 REVERSE LENGTH=2103
Length=2103
Score = 3190 bits (1727), Expect = 0.0
Identities = 1991/2113 (94%), Gaps = 40/2113 (2%)
Strand=Plus/Plus
Query 29 ATGGCGGAGGGGCAATCCCCGGAGAATTCACCGCCGTCCCCTACACCACCATCTCCGTCC 88
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGAGGGGCAATCCCCGGAGAATTCACCGCCGTCCCCTACACCACCATCTCCGTCA 60
Query 89 TCATCCGACAATCAACAACAAtcctctcctccgccttctgattcctcctctccttcacca 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCATCCGACAATCAACAACAATCCTCTCCTCCGCCTTCTGATTCCTCCTCTCCTTCACCA 120
Query 149 ccagctcctcctccGCCGGATGATTCCTCCAATGGTTCCTCTTCATCACCTCCACCGCCT 208
||||||||||||||||| ||||||||||| ||||| | ||||||| |||||||
Sbjct 121 CCAGCTCCTCCTCCGCCCGATGATTCCTCAAATGG-------T--TCACCTCAACCGCCT 171
Query 209 TCTTCAGGCTCAGAATCTCCTCCATCTCCGCAAGGAaacaacaacaatgatggcaacaat 268
||||||| |||| |||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 172 TCTTCAGACTCACAATCACCACCATCTCCGCAAGGAAACAATAACAATGATGGCAACAAT 231
Query 269 ggtaataacaacaatg---------acaacaacaatggtaatagcaacaatggtaataac 319
|||||||||||||||| |||||||||||||||||| |||||| | || |||
Sbjct 232 GGTAATAACAACAATGACAACAACAACAACAACAATGGTAATAACAACAACGACAACAAC 291
Query 320 ------aacaacaatgacaacaacaacaatgggaataac-a-aa-gacaacaacaacaaa 370
|| ||||| ||||||||||||||||| |||||| | || | || |||||| ||
Sbjct 292 AATGGGAATAACAAAGACAACAACAACAATGGCAATAACAACAATGGTAATAACAAC-AA 350
Query 371 tggtcataacaacaatggcaat---aac---------aacaatgacaacaacaaccaaaa 418
||| || |||||||||||||| ||| |||||||||||||||||||||||
Sbjct 351 TGGAAATGACAACAATGGCAATAACAACAATGGGAATAACAATGACAACAACAACCAAAA 410
Query 419 caatggcggaggaagcaacaacCGTTCACCTCCGCCTCCTTCGAGAATCTCTGACCGTAA 478
||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||
Sbjct 411 CAATGGCGGAGGAAGCAACAATCGTTCACCTCCGCCTCCTTCCAGAAACTCTGACCGTAA 470
Query 479 CTCTTCGTCCCCACCAAGAGCGCTGGCTCCGCCTAGATCAAGCGGTGGTGGTTCCAACTC 538
|||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 471 CTCTCCTTCCCCACCAAGAGCGCTGGCTCCTCCTAGATCAAGCGGTGGTGGTTCCAACTC 530
Query 539 CTCAAGTAACAATGAACCAAACACGGCTGCTATCGTAGGAATTGTGGCTGGTGCTGGATT 598
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 CTCCGGCAACAATGAACCAAACACGGCTGCTATCGTAGGAATTGTGGCTGGTGCTGGATT 590
Query 599 GTTGTTTCTTGTTATGATATTGTTCTGCGTCTGTTGCTGTCGTAAGAAGAAAAAGAAGCA 658
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 591 GTTGTTTCTTGTTATGATATTGTTCTGCGTCTGTTGCTGTCGTAAGAAAAAAAAGAAGCA 650
Query 659 TCAAATGCCGTATTATGCAGGCAACGGTTACGCCACCGGCAAAGGCGATCAATACCAACA 718
||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 651 TCAAATGCCCTATTATGCAGGAAACGGCTACGCCACCGGCAAAGGTGATCAATACCAACA 710
Query 719 GCAGCAATACAATAACCAGAGCGATCACGTGATGAATCTGTCTCAGCAATATCCTGGATC 778
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 711 GCAGCAATACAATAACCAGAGCGATCACGTAATGAATCTGTCTCAGCAGTATCCTGGATC 770
Query 779 AAACGGGAATAATAACTGGATGAATTCACCGCCTCCACCACCACCAGGAAGCTGGCAACC 838
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 CAACGGGAATAATAACTGGATGAATTCACCGCCTCCACCACCACCAGGAAGCTGGCAACC 830
Query 839 CTCGCCGCCACCACCACCACCGCCTGTCTCAGGCGGTATGAACGGAAACAGTAGCGACAT 898
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| |
Sbjct 831 ATCGCCGCCTCCACCACCACCGCCAGTCTCAGGCGGTATGAATGGAAACAGTAGCGACTT 890
Query 899 GAGCTCAAACTACTCAGGACCACATGGTCCGTCTCTACCACCACCTCACCCTTCAGTGGC 958
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 891 TAGCTCAAACTACTCAGGACCACATGGTCCGTCGGTACCACCACCTCACCCTTCAGTGGC 950
Query 959 TCTAGGTTTCAACAAGAGCACATTCACCTACGACGAGCTAGCTGCTGCAACTCAAGGCTT 1018
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 951 TCTAGGTTTCAACAAGAGCACATTCACCTACGACGAGCTAGCCGCTGCAACTCAAGGCTT 1010
Query 1019 CTCTCAAGCAAGATTGTTAGGTCAAGGCGGGTTCGGGTATGTTCACAAGGGAATACTTCC 1078
||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1011 CTCCCAATCAAGATTGTTAGGTCAAGGCGGGTTCGGATATGTTCACAAGGGAATACTTCC 1070
Query 1079 CAATGGGAAAGAGATTGCGGTGAAAAGTCTAAAAGCGGGAAGCGGGCAAGGAGAGCGCGA 1138
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1071 CAATGGGAAAGAGATTGCGGTGAAGAGTCTGAAAGCGGGAAGCGGGCAAGGAGAGCGCGA 1130
Query 1139 GTTTCAGGCTGAGGTTGACATTATTAGTCGAGTTCATCATCGGTTTCTTGTGTCTCTTGT 1198
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1131 GTTTCAGGCTGAGGTTGACATCATTAGCCGAGTTCATCATCGGTTTCTTGTGTCTCTTGT 1190
Query 1199 TGGATATTGTATTGCAGGAGGACAGAGGATGTTGGTTTATGAGTTCTTACCTAATGACAC 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TGGATATTGTATTGCAGGAGGACAGAGGATGTTGGTTTATGAGTTCTTACCTAATGACAC 1250
Query 1259 ACTTGAGTTCCATCTCCATGGTAAAAGTGGCAAGGTTCTTGACTGGCCTACAAGACTCAA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 ACTTGAGTTCCATCTCCATGGTAAAAGTGGCAAGGTTCTTGACTGGCCTACAAGACTCAA 1310
Query 1319 GATTGCTTTGGGATCAGCTAAAGGACTTGCTTACTTACATGAAGACTGTCATCCGAAAAT 1378
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1311 GATTGCTTTGGGATCAGCTAAAGGACTTGCTTACTTACATGAAGACTGTCATCCGAGAAT 1370
Query 1379 CATTCATAGAGACATTAAAGCTTCAAACATTCTTCTTGATGAATCCTTTGAAGCTAAGGT 1438
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1371 CATTCATAGAGACATTAAAGCTTCAAACATTCTTCTTGATGAATCCTTTGAGGCTAAGGT 1430
Query 1439 TGCAGACTTCGGGTTAGCGAAGCTATCTCAAGACAATGTTACACATGTGTCCACTCGTAT 1498
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1431 TGCAGACTTCGGGTTAGCGAAGCTATCTCAAGACAATGTTACGCATGTCTCCACTCGTAT 1490
Query 1499 CATGGGAACTTTCGGGTACTTGGCTCCAGAGTATGCGTCAAGCGGGAAGCTGACAGACAG 1558
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1491 CATGGGAACTTTCGGGTACTTGGCTCCAGAGTATGCGTCAAGCGGGAAACTGACAGACCG 1550
Query 1559 ATCCGATGTTTTCTCCTTTGGAGTGATGCTTCTTGAGCTCGTTACCGGACGCAGACCTGT 1618
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1551 ATCAGATGTTTTCTCCTTTGGAGTGATGCTTCTTGAGCTAGTTACCGGACGCAGACCTGT 1610
Query 1619 TGATCTCACTGGTGAAATGGAAGACAGTTTGGTCGATTGGGCAAGACCCTTATGCTTAAA 1678
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1611 TGATCTCACTGGTGAAATGGAAGACAGTTTGGTCGATTGGGCAAGACCCATATGCTTAAA 1670
Query 1679 CGCAGCTCAGGATGGAGATTACAGTGAACTAGTTGATCCACGGCTTGAGAACCAATACGA 1738
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 1671 CGCAGCTCAGGATGGAGATTACAGTGAACTAGTTGATCCACGTCTCGAAAACCAATACGA 1730
Query 1739 GCCTCATGAGATGGCACAAATGGTGGCTTGTGCCGCTGCAGCCATCAGGCACTCAGCCAG 1798
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||
Sbjct 1731 GCCTCATGAGATGGCACAAATGGTTGCTTGTGCCGCTGCAGCCGTCAGGCACTCAGCTAG 1790
Query 1799 ACGCAGGCCTAAGATGAGCCAGATTGTTCGGGCTCTGGAGGGAGATGCATCTCTAGACGA 1858
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1791 ACGCAGGCCTAAGATGAGCCAGATTGTTCGGGCTCTGGAGGGAGATGCAACGCTAGACGA 1850
Query 1859 TCTAAACGAAGGAGGGAAACCGGGGCAAAGCTCATTCCTCGGGAGGGGATCAAGCTCGGA 1918
||||| ||||||||||||| |||| ||||||||||||||||||||||| |||||||||||
Sbjct 1851 TCTAAGCGAAGGAGGGAAAGCGGGACAAAGCTCATTCCTCGGGAGGGGTTCAAGCTCGGA 1910
Query 1919 CTATGACTCAAGCACTTACAGTGCGGATATGAAGAAGTTCAGGAAAGTGGCCTTGGATAG 1978
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1911 CTATGACTCAAGCACTTACAGTGCGGATATGAAGAAGTTCAGGAAAGTGGCATTGGATAG 1970
Query 1979 CCATGAGTACGGTGCAAGCAGCGAGTATGGGAACACGAGCGAATACGGGCTTGACCCGTC 2038
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1971 TCATGAGTACGGTGCAAGCAGCGAGTACGGGAACACGAGCGAATACGGGCTTGACCCGTC 2030
Query 2039 TTCCTCGAGCAGCGAGGAGATTCGTAGAGGAGGAGCTAACAACAACAAAACCACTCCTAG 2098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2031 TTCCTCGAGCAGCGAGGAGATTCGTAGAGGAGGAGCTAACAACAACAAAACCACTCCTAG 2090
Query 2099 CCGAGAGCTTTGA 2111
|||||| | ||||
Sbjct 2091 CCGAGACCATTGA 2103
> AT1G49270.1 | Symbols: | Protein kinase superfamily protein
| chr1:18227334-18230227 REVERSE LENGTH=2100
Length=2100
Score = 861 bits (466), Expect = 0.0
Identities = 1082/1376 (79%), Gaps = 56/1376 (4%)
Strand=Plus/Plus
Query 711 TAC-CAACAGCAGCAATACAATAACCAGAGCGATCAC-GTGATGAATCTGTCTCAGCAAT 768
||| ||||| || ||| | | ||||| | |||||| || |||||||| ||| | |
Sbjct 702 TACACAACAACAACAACATTACAACCAAAATGATCACATTG-TGAATCTGCCTC--C-AC 757
Query 769 ATCCTGGATCAAACGGGAATAATAACTGGATGAATTCACCGCCTCCACCACCACCAGGAA 828
||||||||| || ||||| | |||||| ||| ||||||||| |||||||| |||||||
Sbjct 758 CTCCTGGATC-AATGGGAA-CA-AACTGGGTGAGTTCACCGCCACCACCACCTCCAGGAA 814
Query 829 GCTGGCAACC-CTCGCCGCCACCACCACCACCGCCTGTCTCAGGCGGTATGAACG-GA-- 884
||||| || | |||| | |||||| || || || ||||| || || | ||
Sbjct 815 ATTGGCAGCCAAT-GCCGTCGCCACCAGCA---CCAGTGTCAGGAGGCGCAAATGTGATC 870
Query 885 -AACAGTAGCGACATGAGCTCAAA---CTAC-TCAGGACCACATGGTCCGTCTCTACCAC 939
|| || |||| ||||||||||| || | ||||| ||| | | ||| ||||||||||
Sbjct 871 CAA-AGCGGCGAAATGAGCTCAAATTTCT-CATCAGGTCCATACGCTCCATCTCTACCAC 928
Query 940 CACCTCACCCTTCAGTGGCTCTAGGTTTCAACAAGAGCACATTCACCTACGACGAGCTAG 999
|||||||||||||||||||||| || |||||||| ||||||||||| || || |||||||
Sbjct 929 CACCTCACCCTTCAGTGGCTCTGGGATTCAACAATAGCACATTCACTTATGAGGAGCTAG 988
Query 1000 C-TGCTGCAACTCAAGGCTTCTCTCAAG-CAAGATTGTTAGGTCAAGGCGGGTTCGGGTA 1057
| | | ||||||||||| ||||| ||| | | ||||| || |||||||| ||||| ||
Sbjct 989 CATCC-GCAACTCAAGGTTTCTCAAAAGACCGG-TTGTTGGGACAAGGCGGTTTCGGATA 1046
Query 1058 TGTTCACAAGGGAATACTTCCCAA-TGGGAAAGAGATTGCGGTGAAAAGTCTAAAAGCGG 1116
||||||||| ||||| ||| |||| ||| || ||||| |||||||| || || |||||||
Sbjct 1047 TGTTCACAAAGGAAT-CTTGCCAAATGGTAAGGAGATAGCGGTGAAGAGCCTTAAAGCGG 1105
Query 1117 GAAGCGGGCAAGGAGAGCGCGAGTTTCAGGCTGAGGTTGACATTATTAGTCGAGTTCATC 1176
| ||||||||||| ||| | ||||| ||||| ||||| || || || || || |||||||
Sbjct 1106 GTAGCGGGCAAGGCGAGAGAGAGTTCCAGGCAGAGGTGGAGATCATCAGCCGCGTTCATC 1165
Query 1177 ATCGGTTTCTTGTGTCTCTTGTTGGATATTGTA-T--TGCAGGAGGACAGAGGATGTTGG 1233
|||| ||| ||||||||||| ||||| || | | ||| |||||||||||| ||||||
Sbjct 1166 ATCGACATCTCGTGTCTCTTGTGGGATACTGCAGTAATGCGGGAGGACAGAGGTTGTTGG 1225
Query 1234 TTTATGAGTT-CTTACCTAATGACACACTTGAGTTCCATCTCCATGGTAAAAGTGGCAAG 1292
| |||||||| || ||||||||||||||||||||||| || ||||| |||||||| |
Sbjct 1226 TCTATGAGTTTCTC-CCTAATGACACACTTGAGTTCCACCTTCATGGGAAAAGTGGGACT 1284
Query 1293 GTTCTTGACTGGCCTACAAGACTCAAGATTGCTTTGGGATCAGCTAAAGGACTTGCTTA- 1351
|| | || ||||| || |||||||||||||| || |||||||| ||||| ||||||||
Sbjct 1285 GTGATGGATTGGCCAACCAGACTCAAGATTGCCTTAGGATCAGCAAAAGGTCTTGCTTAT 1344
Query 1352 CTTACATGAAGACTGTCATCCGAAAATCATTCATAGAGACATTAAAGCTTCAAACATTCT 1411
|| ||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1345 CT-ACATGAAGATTGTCATCCAAAAATCATCCATAGAGACATTAAAGCTTCAAACATTCT 1403
Query 1412 TCTTGATGA-ATCCTTTGAAGCTAAGGTTGCAGACTTCGGGTTAGCGAAGCTATCTCAAG 1470
||||| | | | || ||||| ||||||||||| || || || || ||||| || ||||
Sbjct 1404 CCTTGACCATAAC-TTCGAAGCCAAGGTTGCAGATTTTGGTTTGGCCAAGCTCTCCCAAG 1462
Query 1471 ACAATGTTACACATGTGTCCACTCGTATCATGGGAACTTTCGGGTACTTGGCTCCAGAGT 1530
|||| ||||||||| || |||||| | |||||||| ||||| ||||| ||||| || |
Sbjct 1463 ACAACAATACACATGTATCGACTCGTGTTATGGGAACATTCGGATACTTAGCTCCTGAAT 1522
Query 1531 ATGCGTCAAGCGGGAAGCTGACAGACAGATCCGATGTTTTCTCCTTTGGAGTGATGCTTC 1590
|||| || || ||||| || || || | ||| ||||||||||| |||||||| |||||||
Sbjct 1523 ATGCATCGAGTGGGAAACTAACTGAGAAATCAGATGTTTTCTCTTTTGGAGTTATGCTTC 1582
Query 1591 TTGAGCTCGTTACCGGACGCAGACCTGTTGATCTCACTGGTGAAATGGAAGACAGTTTGG 1650
|||||||| | ||||||||| |||| |||||||| | |||||| |||||||||||||| |
Sbjct 1583 TTGAGCTCATAACCGGACGCGGACCGGTTGATCTAAGTGGTGACATGGAAGACAGTTTAG 1642
Query 1651 TCGATTGGGCAAGACCCTTATGCTTAAACGCAGCTCAGGATGGAGATTACAGTGAACTAG 1710
|||||||||| ||||| || ||| | | | ||| || |||||||| || | ||| | |
Sbjct 1643 TCGATTGGGCGAGACCATTGTGCATGAGGGTAGCGCAAGATGGAGAATATGGGGAATTGG 1702
Query 1711 TTGATCCACGGCTTGAGAACCAATACGAGCCTCATGAGATGGCACAAATGGTGGCTTGTG 1770
|||| ||| |||||| |||||||||||||| |||||||||||| |||||||||||||
Sbjct 1703 TTGACCCATTCCTTGAGCACCAATACGAGCCTTATGAGATGGCACGCATGGTGGCTTGTG 1762
Query 1771 CCGCTGCAGCCATCAGGCACTCAGC-CAGACGCAGGCCTAAGATGAGCCAGATTGTTCGG 1829
| ||||||||| | || || || | | | ||| | || |||||||| ||||||||| ||
Sbjct 1763 CTGCTGCAGCCGTAAGACATTCTGGTC-GTCGCCGCCCAAAGATGAGTCAGATTGTTAGG 1821
Query 1830 GC-TCTGGAGGGAGATGCATCTCTAGACGATCTAA-ACGAAGGAGGGAAACCGGGGCAAA 1887
| | ||||||| ||||| || || || || || | |||| || | ||||||| || |
Sbjct 1822 ACGT-TGGAGGGTGATGCCTCGCTGGATGA-CTTAGACGATGGTGTGAAACCGAAACAGA 1879
Query 1888 GCTCATTCCTCGG-GAGGGGATCAAGCTCGGACTATGAC-TCAAGCACTTACAGTGCGGA 1945
| ||| | || || || || |||| |||||||| | |||| || |||| ||
Sbjct 1880 GTTCAAGCGGAGGTGAAGG---CA-GCTCAGACTATGAGATGG-GCACATATGGTGCTGA 1934
Query 1946 TATGAAGAAGTT-CAGGAAAGTGGCCTTGGATAGCCATGAGTACGGTGCAAGCAGCGAGT 2004
|||| |||||| | |||||||| | ||||| || | || ||||| ||||| ||||| |
Sbjct 1935 GATGAGGAAGTTTC-GGAAAGTGACATTGGAAAGTCGGGATTACGGGGCAAGTAGCGAAT 1993
Query 2005 ATGG-GAACACGAGCGAATACGGGCTTGACCCGTCTTCCTCGAGCAGCGAGGAGAT 2059
| || | ||| ||||| |||||||||||||| || || || ||||||||||||||
Sbjct 1994 ACGGTGC-CACAAGCGAGTACGGGCTTGACCCATCCTCTTCAAGCAGCGAGGAGAT 2048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105672147225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5