BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929771
Length=661
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18820.1 | Symbols: ATRABG3F, ATRAB7B, RAB71, RABG3F, RAB7B ... 1109 0.0
AT1G49300.1 | Symbols: ATRAB7, ATRABG3E, RABG3E | RAB GTPase ho... 667 0.0
> AT3G18820.1 | Symbols: ATRABG3F, ATRAB7B, RAB71, RABG3F, RAB7B
| RAB GTPase homolog G3F | chr3:6484068-6486247 FORWARD LENGTH=1061
Length=1061
Score = 1109 bits (600), Expect = 0.0
Identities = 638/657 (97%), Gaps = 0/657 (0%)
Strand=Plus/Plus
Query 5 TTTTAGATCCGATTCGATGCCGTCCCGTAGACGCACTCTCCTGAAAGTCATCATCCTCGG 64
||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||
Sbjct 183 TTTTAGATCCGATTCGATGCCGTCCCGTAGACGTACCCTCCTCAAGGTCATCATCCTCGG 242
Query 65 TGATAGCGGGGTGGGAAAAACCTCTTTGATGAATCAATATGTTAATAAAAAGTTCAGCAA 124
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 243 TGATAGCGGGGTGGGAAAAACCTCTTTGATGAATCAGTATGTTAATAAAAAGTTCAGCAA 302
Query 125 CCAGTACAAGGCAACCATTGGAGCTGACTTCTTGACCAAGGAAGTTCAGTTTGAAGATCG 184
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 303 CCAGTACAAGGCAACCATTGGAGCCGACTTCTTGACCAAGGAAGTACAGTTTGAAGATCG 362
Query 185 ACTTTTCACTTTACAGATCTGGGATACAGCTGGACAGGAAAGGTTTCAGAGCCTTGGTGT 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 ACTTTTCACTTTACAGATCTGGGATACAGCTGGACAGGAAAGGTTTCAGAGCCTTGGTGT 422
Query 245 AGCTTTTTACCGTGGTGCTGATTGCTGTGTTCTTGTATATGATGTCAACTCCATGAAGTC 304
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 423 AGCCTTTTACCGTGGTGCTGATTGCTGTGTTCTTGTATATGATGTCAATTCCATGAAATC 482
Query 305 ATTTGAAAATCTGAACAACTGGAGGGAAGAATTTCTGATCCAGGCGAGTCCATCAGATCC 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 ATTTGAAAATCTGAACAACTGGAGGGAAGAATTTCTGATCCAGGCGAGTCCATCAGATCC 542
Query 365 AGAGAATTTTCCATTTGTTCTTATCGGGAACAAGGTTGACGTGGATGGTGGAAACAGCAG 424
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 543 AGAGAATTTTCCATTTGTTCTTATCGGAAACAAGGTTGACGTGGATGATGGAAACAGCAG 602
Query 425 AGTGGTTTCAGAGAAAAAGGCTAAAGCTTGGTGTGCTTCAAAGGGGAACATTCCTTACTT 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 AGTGGTTTCAGAGAAAAAGGCTAAAGCTTGGTGTGCTTCAAAGGGGAACATTCCTTACTT 662
Query 485 TGAGACCTCTGCCAAAGAAGGTACTAATGTGGAGGAAGCTTTCCAATGCATTGCCAAGAA 544
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
Sbjct 663 TGAGACCTCTGCCAAGGTAGGTACTAATGTGGAGGAAGCTTTCCAATGCATTGCCAAGGA 722
Query 545 CGCATTGAAGAGCGGAGAAGAAGAAGAGTTATACTTGCCAGACACAATCGATGTCGGGAC 604
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 723 CGCATTGAAGAGCGGAGAAGAAGAAGAACTATACTTGCCAGACACAATCGATGTAGGGAC 782
Query 605 GAGCAATCAACAGAGGTCCACAGGGTGTGAATGCTAAGGAGTATCACCAGAAGGAAA 661
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 783 GAGCAATCAACAGAGGTCTACAGGGTGTGAATGCTAAGGAGTATCACCAGAAGGAAA 839
> AT1G49300.1 | Symbols: ATRAB7, ATRABG3E, RABG3E | RAB GTPase
homolog G3E | chr1:18234724-18237231 FORWARD LENGTH=1002
Length=1002
Score = 667 bits (361), Expect = 0.0
Identities = 539/627 (86%), Gaps = 4/627 (1%)
Strand=Plus/Plus
Query 15 GATTCGATGCCGTCCCGTAGACGCACTCTCCTGAAAGTCATCATCCTCGGTGATAGCGGG 74
||||||||||| || |||||| | |||||||| |||||||||||||||||||||||||||
Sbjct 113 GATTCGATGCCTTCTCGTAGAAGAACTCTCCTCAAAGTCATCATCCTCGGTGATAGCGGG 172
Query 75 G-TGGGAAAAACCTCTTTGATGAATCAATATGTTAATAAAAAGTTCAGCAACCAGTACAA 133
| |||| || || ||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 173 GTTGGG-AAGACTTCTTTAATGAATCAATATGTTAATAAGAAGTTCAGCAACCAGTATAA 231
Query 134 GGCAACCATTGGAGCTGACTTCTTGACCAAGGAAGTTCAGTTTGAAGATCGACTTTTCAC 193
|||||| ||||| ||||| |||||||| ||||||||||| |||||||| || ||||||||
Sbjct 232 GGCAACTATTGGGGCTGATTTCTTGACTAAGGAAGTTCAATTTGAAGACCGGCTTTTCAC 291
Query 194 TTTACAGATCTGGGATACAGCTGGACAGGAAAGGTTTCAGAGCCTTGGTGTAGCTTTTTA 253
||||||||||||||| |||||||| || |||||||||||||| |||||||| || |||||
Sbjct 292 TTTACAGATCTGGGACACAGCTGGTCAAGAAAGGTTTCAGAGTCTTGGTGTTGCGTTTTA 351
Query 254 CCGTGGTGCTGATTGCTGTGTTCTTGTATATGATGTCAACTCCATGAAGTCATTTGAAAA 313
|||||||||||||||||||||||||||||||||||||||||| || ||||| || |
Sbjct 352 TCGTGGTGCTGATTGCTGTGTTCTTGTATATGATGTCAACTCCGCAAAATCATTCGAGGA 411
Query 314 TCTGAACAACTGGAGGGAAGAATTTCTGATCCAGGCGAGTCCATCAGATCCAGAGAATTT 373
||| ||||||||||||||||| |||||||||||||| ||||| || ||||||||||| ||
Sbjct 412 TCTCAACAACTGGAGGGAAGAGTTTCTGATCCAGGCAAGTCCTTCGGATCCAGAGAACTT 471
Query 374 TCCATTTGTTCTTATCGGGAACAAGGTTGACGTGGATGGTGGAAACAGCAGAGTGGTTTC 433
||| |||||| ||||||| || ||| | || ||||||||||||| |||| | ||||| ||
Sbjct 472 TCCCTTTGTTGTTATCGGTAATAAGATCGATGTGGATGGTGGAAGCAGCCGGGTGGTATC 531
Query 434 AGAGAAAAAGGCTAAAGCTTGGTGTGCTTC-AAAGGGGAACATTCCTTACTTTGAGACCT 492
|||||| |||||| ||||||||||||||| ||||| |||||||| |||| ||| ||||
Sbjct 532 AGAGAAGAAGGCTCGAGCTTGGTGTGCTTCGAAAGGA-AACATTCCATACTATGAAACCT 590
Query 493 CTGCCAAAGAAGGTACTAATGTGGAGGAAGCTTTCCAATGCATTGCCAAGAACGCATTGA 552
| || |||| ||| || ||||| || || || |||| ||||| | | ||||||| |||
Sbjct 591 CAGCTAAAGTAGGCACCAATGTAGAAGACGCGTTCCTGTGCATAACTACGAACGCAATGA 650
Query 553 AGAGCGGAGAAGAAGAAGAGTTATACTTGCCAGACACAATCGATGTCGGGACGAGCAATC 612
|||| |||||||| ||||| | ||| | |||||||| ||||||||||| || |||||||
Sbjct 651 AGAGTGGAGAAGAGGAAGAAATGTACCTACCAGACACGATCGATGTCGGAACCAGCAATC 710
Query 613 AACAGAGGTCCACAGGGTGTGAATGCT 639
||||||||| ||||| ||||||||||
Sbjct 711 CACAGAGGTCAACAGGATGTGAATGCT 737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31948917492
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5