BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929772
Length=1667
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18830.1 | Symbols: ATPLT5, PMT5, ATPMT5 | polyol/monosaccha... 2492 0.0
> AT3G18830.1 | Symbols: ATPLT5, PMT5, ATPMT5 | polyol/monosaccharide
transporter 5 | chr3:6488862-6491273 REVERSE LENGTH=1822
Length=1822
Score = 2492 bits (1349), Expect = 0.0
Identities = 1563/1668 (94%), Gaps = 7/1668 (0%)
Strand=Plus/Plus
Query 3 tctctctctctcCCCATTCTCTATCATAATGACAGGTTCCACACCGGAAAACCAAACGGC 62
|||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 37 TCTCTCTCTCGCCCCATTCTCTATCATAATGACAGGTGCCACACCGGAAAACCGAACGGC 96
Query 63 CCCAG-CGCCACCACCGGTGAAACATGTGCCGGCGTCAGTTCTGCCGGCTAAACCACCAA 121
||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 97 CCC-GTCGCCACCACCGGTGAAACATGTGCCGGAGTCAGTTCTGCCGGCTAAACCACCAA 155
Query 122 AGAGGAACAAGTATGCATTCGCGTGTGCTATCTTAGCTTCCATGACTTCCATCCTCCTCG 181
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 156 AGAGGAACAATTATGCATTCGCGTGTGCTATCTTAGCTTCCATGACTTCTATCCTCCTTG 215
Query 182 GTTATGATATAGGAGTGATGAGTGGAGCAATGATATATATAAAGAGAGATTTGAAGATTA 241
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 216 GTTATGATATAGGAGTGATGAGTGGAGCAATGATTTATATAAAGAGAGATTTGAAGATTA 275
Query 242 GTGATTTACAAATTGGTATTCTCGCAGGAATCCTCAACATCTATTCACTTATAGGATCTT 301
|||||||||||| || |||||||| |||| |||||||||||||||||||||||||||||
Sbjct 276 ATGATTTACAAATCGGGATTCTCGCTGGAAGCCTCAACATCTATTCACTTATAGGATCTT 335
Query 302 GCGCCGCCGGAAAAACCTCTGACTTGATTGGTCGACGTTATACTATCGTGCTGGCTGGAG 361
|||||||||||| ||||||||||| ||||||||| ||||| ||||||||| |||||||||
Sbjct 336 GCGCCGCCGGAAGAACCTCTGACTGGATTGGTCGGCGTTACACTATCGTGTTGGCTGGAG 395
Query 362 CCATATTCTTCGTCGGAGCTATCCTTATGGGATTAG-CCCCTAACTACGCTTTCCTCATG 420
|||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 396 CCATATTCTTCGCCGGAGCTATCCTTATGGGATT-GTCCCCTAACTACGCTTTCCTCATG 454
Query 421 TTCGGAAGGTTCGTCGCCGGTGTTGGCGTCGGATACGCCCTCATGATCGCACCAGTTTAT 480
|||||||||||| |||||||| | ||||||||||| || |||||||||||||||||||||
Sbjct 455 TTCGGAAGGTTCATCGCCGGTATCGGCGTCGGATATGCTCTCATGATCGCACCAGTTTAT 514
Query 481 ACCGCCGAAGTCTCTCCGGCCTCTTCCCGCGGCTTCCTCACCTCCTTCCCGGAGGTGTTC 540
|||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||
Sbjct 515 ACCGCCGAAGTCTCTCCGGCATCTTCCCGCGGCTTCCTCAATTCCTTCCCCGAGGTGTTT 574
Query 541 ATAAATGCCGGAATTATGCTCGGCTACGTATCAAATTTGGCTTTCTCGAAATTTCCGTTG 600
|| || ||||||||||||||||| |||||||||||| ||||||||||||| || ||||||
Sbjct 575 ATCAACGCCGGAATTATGCTCGGGTACGTATCAAATCTGGCTTTCTCGAACTTGCCGTTG 634
Query 601 AAACTGGGATGGAGACTCATGCTCGGGATCGGAGCCGTACCGTCCGTGATACTCGCTCTC 660
|| | ||||||||||| |||||||| |||||||||||||| ||||||||||||||| ||
Sbjct 635 AAGGTAGGATGGAGACTGATGCTCGGAATCGGAGCCGTACCTTCCGTGATACTCGCTATC 694
Query 661 GGCGTTCTCGCTATGCCGGAATCTCCACGTTGGCTCGTTATGCAAGGCCGTCTCGGCGAA 720
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 695 GGCGTTCTCGCTATGCCGGAATCTCCACGGTGGCTCGTTATGCAAGGCCGTCTCGGTGAT 754
Query 721 GCCAAACGCGTTCTCGACAAAACCTCTGATTCCCCCACCGAAGCAGCTCTCCGTCTTGAA 780
||||| |||||||| |||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 755 GCCAAGCGCGTTCTGGACAAAACCTCTGATTCCCCCACCGAAGCAACTCTCCGTCTCGAA 814
Query 781 GACATCAAACACGCCGCCGGTATTCCCGCCGATTGCCACGACGACGTCGTTCAGGTGTCG 840
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GACATCAAACACGCCGCTGGTATTCCCGCCGATTGCCACGACGACGTCGTTCAGGTGTCG 874
Query 841 AAGAGGAACAGTCATGGAGAAGGAGTTTGGAGAGAGCTCTTAATCCGTCCAACTCCAGCC 900
| |||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 875 AGGAGGAACAGTCATGGAGAAGGAGTTTGGAGAGAGCTTTTAATCCGACCAACACCAGCC 934
Query 901 GTGCGTCGTGTTATGATCGCTGCACTAGGAATCCATTTCTTCCAGCAAGCTTCAGGTATC 960
|||||||||||||||||||| ||| | |||||||||||||||||||||||||| ||||||
Sbjct 935 GTGCGTCGTGTTATGATCGCCGCAATCGGAATCCATTTCTTCCAGCAAGCTTCCGGTATC 994
Query 961 GACGCGGTGGTTCTCTTTTCACCGCGAATTTTCAAAACCGCCGGACTCAAAACCGATCAT 1020
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 995 GACGCGGTGGTTCTCTTCTCACCGCGAATTTTCAAAACCGCCGGACTCAAAACCGATCAC 1054
Query 1021 CAACAGCTTCTAGCGACTGTAGCGGTAGGAGTGGTGAAGACATCGTTCATACTAGTCGCC 1080
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 1055 CAACAGCTTCTAGCGACTGTAGCAGTAGGAGTAGTGAAGACATCATTCATACTAGTCGCC 1114
Query 1081 ACTTTCTTACTGGACCGAATCGGAAGAAGACCCTTGCTTCTAACCAGCGTCGGAGGAATG 1140
||||||||||| ||| ||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 1115 ACTTTCTTACTCGACAGAATCGGGAGAAGACCATTGCTTCTAACCAGCGTAGGAGGAATG 1174
Query 1141 GTACTATCACTAGCGGCGTTAGCAACTTCTCTAACGATTATAGACCAGTCGGAGAAGAAA 1200
|||||||| ||||| ||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1175 GTACTATCTCTAGCAGCGTTAGGGACTTCTCTAACGATTATAGACCAGTCAGAGAAGAAA 1234
Query 1201 GTGATGTGGGCTGTGGTGGTAGCTATAGCGACGGTGATGACTTATGTAGCTACGTTTTCG 1260
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1235 GTGATGTGGGCTGTGGTTGTAGCTATAGCTACGGTGATGACTTATGTAGCTACGTTTTCG 1294
Query 1261 ATTGGAGCTGGACCGATAACTTGGGTTTATAGCTCGGAGATATTCCCGTTGAGGTTGAGA 1320
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 ATAGGAGCTGGACCGATAACTTGGGTTTATAGCTCGGAGATATTCCCGTTGAGGTTGAGA 1354
Query 1321 TCACAGGGTTCGAGTATGGGTGTGGTGGTGAACAGAGTGACTAGTGGTGTGATTTCGATG 1380
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1355 TCACAGGGCTCGAGTATGGGTGTGGTGGTGAACAGAGTGACTAGTGGTGTGATCTCGATA 1414
Query 1381 GCGTTTCTTCCTTTGTCGAAAGGGATAACCACCGGTGGAGCGTTTTACTTGTTCGGAGGA 1440
|||||||||| ||||||||| ||| || || |||||||||||||||||||| |||||
Sbjct 1415 TCGTTTCTTCCAATGTCGAAAGCGATGACTACTGGTGGAGCGTTTTACTTGTTTGGAGGG 1474
Query 1441 ATTGCGACAGTAGCTTGGGTTTTCTTTTACACTTTCTTGCCGGAGACGCAAGGGAGGATG 1500
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 ATTGCGACTGTGGCTTGGGTTTTCTTTTACACTTTCTTGCCGGAGACGCAAGGGAGGATG 1534
Query 1501 CTTGAGGATATGGATGAGCTTTTCAGTGGTTTCAGGTGGAGAGATTCCAAGAATAAGCCT 1560
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1535 CTTGAGGATATGGATGAGCTTTTCAGTGGTTTCAGGTGGAGAGATTCCAAGAGTAAGCCT 1594
Query 1561 AAGAGTAACCCCGAGAAGACGGTTTCGAATCCCGAGGTCGAGATTGGATCAAACAAGCAG 1620
||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1595 AAGGGTAACCCCGAGAAGACGGTACCGAATCCCGAGGTTGAGATTGGATCAAACAAGCAG 1654
Query 1621 TGGAGGGAAG-A--CACACAAAGTTCGTAGAAAATTTGATAAGATATG 1665
|||| ||||| | |||||||||||||||| ||||||||| |||||||
Sbjct 1655 TGGAAGGAAGGAGACACACAAAGTTCGTAGGAAATTTGATCAGATATG 1702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82379094345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5