BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929776
Length=872
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18870.1 | Symbols: | Mitochondrial transcription terminati... 1256 0.0
> AT3G18870.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr3:6508385-6509343 REVERSE LENGTH=959
Length=959
Score = 1256 bits (680), Expect = 0.0
Identities = 790/841 (94%), Gaps = 16/841 (2%)
Strand=Plus/Plus
Query 17 CGATATGGCTGTTATTGCTTCAC-T--TCAtcttcaacctctctcgtctttctcgtcgtc 73
||||||||||||||||||||||| | ||||||||||||||||||||| || || |||||
Sbjct 1 CGATATGGCTGTTATTGCTTCACTTCATCATCTTCAACCTCTCTCGTC-TT-TC-TCGTC 57
Query 74 gtcttctcctcctcctccttcaagctctaca-cctctctatctcAAATTCCAAACCTCGC 132
|| ||||| | ||||||||||||||| | ||||||||||| |||||||||||||| |
Sbjct 58 -TC--CTCCT--T-CTCCTTCAAGCTCTA-AGCCTCTCTATCTAAAATTCCAAACCTCAC 110
Query 133 ACCGTAAAAATCTAAGACACCTTTCTTCGCTCGGAATTGTTCCTCCGAATCCCCGACTTG 192
||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 111 ACCGTGAAAATCTAAGACACCTTTCTTCTCTCGGAATTGTTCCTCAGAATCCCCGACTTG 170
Query 193 CTCCTCCGGCGAATGATCTTCCCGTTATCTTCTCCGCCGTGAACT-TCCTCAAATCGAAA 251
|||||||||||||||||||| |||||||| ||||||||||||| | ||||||||||||||
Sbjct 171 CTCCTCCGGCGAATGATCTTTCCGTTATCCTCTCCGCCGTGAA-TCTCCTCAAATCGAAA 229
Query 252 GGAATCTCCGACGAAGATTTCCCACGACTCGTATTCCTCTGTCCACAGCTCTTCTCTCCC 311
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 230 GGAATCTCCGACGAAGATTTCCCACGCCTCGTTTTCCTCTGTCCACAGCTCTTCTCGCCC 289
Query 312 ACTTTCGACATTTCTAAAATCGACCCCGTCTTCGATTTTCTCACCGGCGAGCTCGGAGCT 371
||||||||||| |||||| |||| ||||||||||||||||||||||||||||| ||||||
Sbjct 290 ACTTTCGACATCTCTAAACTCGATCCCGTCTTCGATTTTCTCACCGGCGAGCTTGGAGCT 349
Query 372 TCCACAGAAGAATCCAGGGGCTTAATCGTAAATTGCCCGAACATTCTCCTCTCCGACGTA 431
||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 350 TCCGCAGAAGAATCCAGGGGCTTAATCGTAAATTGCCCGAACATCCTCTTCTCCGACGTT 409
Query 432 GAGTATTGCTTGAGGCCGACGCTTGTTTACCTTAAGGAGCTAGGGTTACGGAATCTGAAC 491
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 410 GAGTATTGCTTGAGACCGACGCTTGTTTACCTTAAGGAGCTAGGGGTACGGAATCTGAAC 469
Query 492 CGAGCTAGCAAGATGAACGCGCACGTGCTGAACACGAGAGTTGAGAAGCTAAGAGCTAAG 551
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 470 CGAGCCAGCAAGACGAACGCGCACGTGCTGAACACGAGAGTTGAGAAGCTAAGAGCAAAG 529
Query 552 ATGAGATTCTTGAAGAGTATAGGATTCGAACACGAAGAAGCAGCTAGAGTCTGTGGGAGA 611
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 530 ATGAGATTCTTGAAGAGTATAGGTTTCGAACACGAGGAAGCAGCTAGAGTCTGTGGGAGA 589
Query 612 ATCCCGGCGATATTCGGATACAGTGTTGACGATAACTTGAGGCCCAAGTTCGAGTTTCTG 671
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 590 ATCCCGGCGATATTCGGATACAGTGTTGAAGATAACTTGAGGCCCAAGTTCGAGTTTCTC 649
Query 672 GTTTACGACATGGAAAGAGAACTTGAAGAGCTCAAGAAGTTTCCTCAGTATTTTGGGTTT 731
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 650 GTTTACGACATGGAAAGAGAACTTGAAGAGCTCAAGAAGTTTCCGCAGTATTTTGCGTTT 709
Query 732 AGCTTGGGGAAGAGGATAAAGCCAAGACATTGGCATCTGAAGAAGAAGAACGTTAGGGTT 791
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 710 AGCTTGGGGAAGAGGATAAGGCCAAGACATTGGCATTTGAAGAAGAAGAACGTTAGGGTT 769
Query 792 TCACTTAGTAGAATGTTAATGTGGGGTGATCATAAATTTTACTCCAAATGGAAGCCATAA 851
|| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 770 TCGCTTAGTAGAATGTTAATGTGGGGTGATCAAAAATTCTACTCAAAATGGAAGCCATAA 829
Query 852 G 852
|
Sbjct 830 G 830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42548322509
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5