BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929790

Length=903
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G19025.1 | Symbols:  | pseudogene, similar to ethylene-induc...   484    5e-136


> AT3G19025.1 | Symbols:  | pseudogene, similar to ethylene-induced 
esterase, blastp match of 45% identity and 7.4e-14 P-value 
to GP|14279437|gb|AAK58599.1|AF269158_1|AF269158 ethylene-induced 
esterase {Citrus sinensis} | chr3:6562629-6563635 
FORWARD LENGTH=1007
Length=1007

 Score =  484 bits (262),  Expect = 5e-136
 Identities = 377/427 (88%), Gaps = 29/427 (7%)
 Strand=Plus/Plus

Query  1    GCAATAAAGTCAAAAGAAAAAATGGTGAGCAAAACAAACAAATACTTAACCTCAATTCTT  60
            |||||||||| ||||||||||||||||||||||||||| |  ||||||||||||||||||
Sbjct  78   GCAATAAAGTGAAAAGAAAAAATGGTGAGCAAAACAAATAGTTACTTAACCTCAATTCTT  137

Query  61   GTGATATTGATCAGCTTATACTACCGTCCTATCT----C-CG-C-C-A--CGCAACATGG  110
            || ||||||||||||  |||||||||||||||||    | || | | |  ||||||||||
Sbjct  138  GTTATATTGATCAGCCGATACTACCGTCCTATCTCCGCCACGCCACAACCCGCAACATGG  197

Query  111  CCGGGCCCATTTCGTGTTGGTTCATGGAGCCGGCCATGGGGCTTGGTGTTGGTATAAACT  170
            |||||||||||| ||| |||||||||||    | | |  || ||  | ||||||||||||
Sbjct  198  CCGGGCCCATTTTGTGATGGTTCATGGA----G-C-T-TGG-TT--T-TTGGTATAAACT  246

Query  171  CATACCAATCTTGAAATCTCAAGGCCATAACGTAACTGCGGTCAACTTAGCGGCGTCCGG  230
             |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct  247  -ATACCATTCTTGAAATCTCAAGGCCATAACGTAACTGCGGTCAACTTAGCGGCATCCAG  305

Query  231  GATCGATCTACGACAGG-CTGAGACTCTACGGTCT-GTTGCGGAGTATATTGGGCCCTTG  288
             ||||||| |  || || ||||||||||||||| | |||||||||| |||||||||||||
Sbjct  306  AATCGATCAATAAC-GGCCTGAGACTCTACGGT-TGGTTGCGGAGTCTATTGGGCCCTTG  363

Query  289  ATGGGCCTAATGGAGAGTCTAGGTGAGGATGAGAAGGTGATTCT-CGTGGCACATAGTTT  347
            |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct  364  ATGGGCCTAATGGAGAGTCTAGGTGAGGATGAGAAGGTGATTCTTC-TGGCACATAGTTT  422

Query  348  GGGTGGG-CTTGCTATTTCTAAGGCCATGGAGATGTTCTACAAAAAGGTTCATATGGCTA  406
            | ||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct  423  GAGTGGGGCTTGCTATTCCTAAGGCCATGGAGTTGTTCTACAAAAAGGTTCATATGGCTA  482

Query  407  TTTTCGT  413
            |||||||
Sbjct  483  TTTTCGT  489


 Score =  219 bits (118),  Expect = 5e-56
 Identities = 138/148 (93%), Gaps = 0/148 (0%)
 Strand=Plus/Plus

Query  735  ATTAGTGAAAGAGTTTCAGCTCTGGATGATCAAGAACAACCCTCCTAACCACGTGGAGCA  794
            ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  491  ATTGGTGAAAGAGTTTCAGCACTGGATGATCAAGAACAACCCTCCTAACCACGTGGAGCA  550

Query  795  TATCCAGAATTCTGATCATATGGTCATGATTTCTAGGCCGCTAGATCTTGGTGCCTGTCT  854
            |||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||| |
Sbjct  551  TATCCAGAATTCTGATCATATGGTCACGATTTCAAGGCCGTTAGATCTTGGTGCCTGTAT  610

Query  855  ATTGTCTTCGGCTAAGAAGTTCGCTTGA  882
             || |||| |||||||||||| ||||||
Sbjct  611  TTTTTCTTTGGCTAAGAAGTTTGCTTGA  638



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44105581066


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5