BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929800
Length=376
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19140.1 | Symbols: DNF | RING/U-box superfamily protein | c... 241 4e-63
> AT3G19140.1 | Symbols: DNF | RING/U-box superfamily protein |
chr3:6614910-6615335 REVERSE LENGTH=426
Length=426
Score = 241 bits (130), Expect = 4e-63
Identities = 219/261 (84%), Gaps = 9/261 (3%)
Strand=Plus/Plus
Query 24 ATGAACGAAGATGTTCTCGAAGCTCTAGGATGTCTCG-TC-TTCTTCGCGATTCTGACTG 81
||||||||||||| |||||||||| || || ||||| | |||||||||||||||||||
Sbjct 1 ATGAACGAAGATGCTCTCGAAGCTGTACGA--TCTCGCACATTCTTCGCGATTCTGACTG 58
Query 82 TGTTTTATTGTGTATTTCGTTGTTGTCTTGCTTATTGCGACAACGGTGATGATGATGATC 141
||||||||| | |||||||||||||||||||||||||| |||| ||||| |||||| |||
Sbjct 59 TGTTTTATTCTATATTTCGTTGTTGTCTTGCTTATTGCAACAAAGGTGACGATGATCATC 118
Query 142 ATCCAAATCATCCCGGTCATAGTTTACATGTAATAAAAGCTGCTGGGAT-AGGCCTTTCC 200
| | |||||| |||||||||||||||| |||||||| ||||||| | |||| ||
Sbjct 119 -TG-AT-TCATCCTAGTCATAGTTTACATGTCATAAAAGCCACTGGGATCAACCCTT-CC 174
Query 201 GTTCTCCAATCGATCCCCGTCTTATCTTTCAACGCTCATGACTTTAAAGATAACGTCGAA 260
||||| ||| || || ||| |||||||||||||| ||| ||| ||||| || |||||
Sbjct 175 GTTCTTTTATCAATTCCTGTCGTATCTTTCAACGCTAATGCCTTCAAAGACAATATCGAA 234
Query 261 TGCGTCGTTTGTCTATCGAAG 281
||||||||||||||||| |||
Sbjct 235 TGCGTCGTTTGTCTATCAAAG 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17694247648
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5