BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929810
Length=605
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19220.1 | Symbols: CYO1, SCO2 | protein disulfide isomerase... 1007 0.0
> AT3G19220.1 | Symbols: CYO1, SCO2 | protein disulfide isomerases
| chr3:6659164-6660852 FORWARD LENGTH=971
Length=971
Score = 1007 bits (545), Expect = 0.0
Identities = 586/606 (97%), Gaps = 1/606 (0%)
Strand=Plus/Plus
Query 1 ACCTGCAAA-TTCTCGTCTCGATGTTCCGATTATACCCTAATTGCTCTCTACCTTCTCAC 59
||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 23 ACCTGCAAACTTCTCGTCTCAATGTTCCGATTATACCCTAATTGCTCTCTGCCTTCTCAC 82
Query 60 AGACCTCTCGTTTTCCTTCCCCGTCTCCCTTCTCGCTCCCTCCGTTGCCGCGCCGCCGCT 119
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 83 AGACCTCTCGTTTTCCTTCCTCGTCTTCCTTCTCGCTCCCTCCGTTGCCGCGCCGCCGCT 142
Query 120 GATATTCCCCTTGGCGACGGAATCCGGTTACCTCGAGAAGCTGATTCCACCTCTGACACG 179
|||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 143 GATATTCCCCTTGGTGACGGAATCCGATTACCTCGAGAAGCGGATTCAACCTCTGACACG 202
Query 180 GCGAGGTCTCGGGATGTTTCCGTCGCCGCCGGCGGGGATGGTGAAGGTGCAAAGTGGAGG 239
|||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||
Sbjct 203 GCGAGGTCTCGGGATGTTTCCGTCGCCGCCGGTGGGAATGGTGAAGGTGCTAAGTGGAGG 262
Query 240 AAGAGGAGGTTGCTCTGGTCGAAAAGTGGGGAGAGTTACTTGGTAGATGACGGCGACGCG 299
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 263 AAGAGGAGGTTGCTCTGGTCGAAAAGTGGAGAGAGTTACTTGGTAGATGATGGCGACGCG 322
Query 300 CTTCCTCTTCCTATGACTTATCCTGATACATCCCCTGTGTCGCCGGATGTGATTGACCGG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 CTTCCTCTTCCTATGACTTATCCTGATACATCCCCTGTGTCGCCGGATGTGATTGACCGG 382
Query 360 AGATTGCAATGTGATCCTGTAGTCGAGGATTGCCGGGAAGTGGTATATGAATGGACTGGA 419
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 383 AGGTTGCAATGTGATCCTGTAGTCGAGGATTGCCGGGAAGTGGTTTATGAATGGACTGGA 442
Query 420 AAGTGTAGAAGTTGCCAAGGATCTGGAACTGTCAGCTATTACAAGAAAAGGGGTAAAGAG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 AAGTGTAGAAGTTGCCAAGGATCTGGAACTGTCAGCTATTACAAGAAAAGGGGTAAAGAG 502
Query 480 GTTATATGCAAGTGCATACCCTGCCAAGGGATAGGATATGTACAGAAGATAACAACTCGG 539
||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 503 GTTATATGCAAATGCATACCCTGCCAAGGGATAGGATATGTGCAGAAGATAACATCTCGG 562
Query 540 ACGGACATTGAAGTGATGGAAGATTTGGATAATGAACCATCTTGACCTTGAATGTGGCCC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 563 ACGGACATTGAAGTGATGGAAGATTTGGATAATGAACCATCTTGACCTTGAATATGGCCC 622
Query 600 ATTTTT 605
||||||
Sbjct 623 ATTTTT 628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29135805260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5