BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929832
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19410.1 | Symbols: | F-box and associated interaction doma... 1162 0.0
AT3G18910.1 | Symbols: ETP2 | EIN2 targeting protein2 | chr3:65... 494 1e-138
AT3G18900.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 252 7e-66
AT3G22730.1 | Symbols: | F-box and associated interaction doma... 56.5 6e-07
> AT3G19410.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6729585-6730706 FORWARD LENGTH=1122
Length=1122
Score = 1162 bits (629), Expect = 0.0
Identities = 991/1157 (86%), Gaps = 59/1157 (5%)
Strand=Plus/Plus
Query 23 ATGACGATACCTGAGCTTCCAAAGGTTTTGATAGAGGAGATACTCTGTTACGTACCGACG 82
||||||||||| ||||| ||||||| ||||||||||||||||||||||||||| ||| ||
Sbjct 1 ATGACGATACCCGAGCTGCCAAAGGATTTGATAGAGGAGATACTCTGTTACGTTCCGGCG 60
Query 83 ACATATCTCAAACGATTACGTTCTACTTGCAAAGAATGGAACCGTTTATTCAAAGATGAT 142
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 ACATATCTGAAACGATTACGTTCTACTTGCAAAGGATGGAACCGTTTATTCAAAGATGAT 120
Query 143 CGGAGATTCG-AAAGAAAGCATTTTGATAAAGCCGCAAAGCAGTGTCTACCTCTCATATC 201
|| ||||||| || |||||||| ||| |||||||||||||||| |||||| ||||| ||
Sbjct 121 CGAAGATTCGCCAA-AAAGCATTATGACAAAGCCGCAAAGCAGTTTCTACCCCTCATGTC 179
Query 202 GACCAAGTACCACAAGGTA-CCTTGTTTGATGAGCCTCAATCTCCATGGAATTATGCCAT 260
||| | | | || | | | |||| ||||||| ||||||||||||||| || ||||
Sbjct 180 AACC-A--A-C-GAA-G-AGCTTTGTGCGATGAGCGTCAATCTCCATGGAACGATACCAT 232
Query 261 CTTTAGAGGTTGAAAG-TAAG-ATTAGGCGAGTCGATTCAGATTCTAAGTATCCAATTAG 318
||||||||| | |||| |||| || ||| | ||| ||||||||||||| | ||| |
Sbjct 233 CTTTAGAGG-TAAAAGATAAGCCTT-GGCTATTCGTTTCAGATTCTAAG----C-ATT-G 284
Query 319 TACTAAAATGGAAAAT-TCTCGAGTCTTTCACTGTGGCGGCTTGTTGTTATGCTCCTCCC 377
| | || | |||| |||||| |||||||| ||||||||||||||||||||| |||||
Sbjct 285 ---TGATATCG-AAATATCTCGAATCTTTCACAGTGGCGGCTTGTTGTTATGCTTCTCCC 340
Query 378 AAGACGACG-AATCTGCAATCTTGGTTTGGAACCCGTTAACTGGTGAAAACAGGTGGA-T 435
||||| || ||| | ||||| | |||||||||||||||||| |||||| ||||| || |
Sbjct 341 GAGACGGCGAAAT-TTCAATCATAGTTTGGAACCCGTTAACTAGTGAAACCAGGTTGATT 399
Query 436 CAAAACCGGGAATCGTCGCGATAAAGGACGCACCTTTGTTCTTGGATACTACTACCAAGA 495
| |||| |||||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 400 C-GAACCCGGAATCGTCGCGATAAAGGACGCAACTTTGTTCTTGGATACTA-T--CAAGA 455
Query 496 AGACAAAAAACCCTGCTACAAAATCTTGAGCTTTTATAGTGACAGCAATGATTTCGAAAT 555
|||||||||| ||| |||||||||||||||||||||| ||| ||||| |||||||||||
Sbjct 456 AGACAAAAAAACCTACTACAAAATCTTGAGCTTTTATCTTGATAGCAAAGATTTCGAAAT 515
Query 556 CTTCGAGTTTAACTCTGATTCATGGAGGTTTATTGATGATATCTGTCCAGGCTGGTCCTT 615
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 516 CTTCGAGTTTAACTCTGATTCATGGAGGTTTATTGATGATATCTGTCCAGGCTTGTCCTT 575
Query 616 GCCAAACCCTTG-TCAATGCGTATCTTTGAAGGGAAAAACATACATGTTTGCTTTAGATG 674
|| | || || | ||||||||| |||||||||||||| ||||||||||||||| ||||||
Sbjct 576 GCTATACTCT-GATCAATGCGTGTCTTTGAAGGGAAATACATACATGTTTGCTATAGATG 634
Query 675 AAACAAAAACGTGTGTATCCTTGCTCAAATATGATTATTCAACAGAGAAATCTATACTTG 734
| | || |||| |||||||||||||||||||| ||||||||||| |||| | | ||
Sbjct 635 A--CTTAA--GTGT--ATCCTTGCTCAAATATGATTTTTCAACAGAGACATCTGTTCCTG 688
Query 735 TGCCTCTTCCATACAAGAGTCGTTGTTTTGAAGAGACTAGTCTTTCCGTTGTTAGAGAAG 794
| |||||||| || || ||||||| |||||||| | |||||||||||| ||||||||||
Sbjct 689 TACCTCTTCCCTATAAAAGTCGTTCTTTTGAAGCTATTAGTCTTTCCGTGGTTAGAGAAG 748
Query 795 AGAAACTTTCAGTGTTATTACAGAGAGATAAAAGTT-GCAAGACTGAGATATGGGTGACA 853
|||| || || |||||||||||| |||||||||||| | || ||||||||||||||||||
Sbjct 749 AGAAGCTCTCTGTGTTATTACAGCGAGATAAAAGTTCGAAA-ACTGAGATATGGGTGACA 807
Query 854 AATG--A--GA-----CCACCACCAAAGCGATGGTGGTGTCGTGGAGCAAGGTCTTGGCA 904
|||| | || |||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 808 AATGTGATTGATGAAACCACCACCAAAGTGATGGTGGTGTCGTGGAGCAAGGTCTTATCA 867
Query 905 TTGGATTTGAGCCCTCTTCTTGAAATTTGGTATG-ATGGAAGTTTCTTTCTTGAGGAGGA 963
||||||||||||||| |||| ||||| |||||| | | ||||||||| || || || ||
Sbjct 868 TTGGATTTGAGCCCTGATCTTAAAATTAGGTATGGA-GAAAGTTTCTTGCTGGACGAAGA 926
Query 964 GAAGAAAGTCATCATGATTTCTAATAGAT-GGATAGAAGAAGA---CAAATCCGAAGACA 1019
||||||||| |||||||||| ||||| | |||| |||||||| ||||||||||||||
Sbjct 927 GAAGAAAGTGATCATGATTTTTAATA-ACCGGATGGAAGAAGAGAACAAATCCGAAGACA 985
Query 1020 ATCTATACATTGTTGGGGAGGACGCTAATAAAGCCACACAAGTATATACAATCGATGGAT 1079
| ||||||||| ||||||| |||| |||||||||||||||||||||||||||| ||||||
Sbjct 986 AACTATACATTATTGGGGACGACGATAATAAAGCCACACAAGTATATACAATCCATGGAT 1045
Query 1080 GTGGATCAGCTGTTTATAATTATGTTCCAAGTTTGGTTCAAATCGAGCGA-GCTCGAGGC 1138
|||| ||||||||| ||| ||| |||||||||||||||||||||||| | |||| ||||
Sbjct 1046 ATGGACCAGCTGTTTTTAACTATTTTCCAAGTTTGGTTCAAATCGAGCAAAGCTCTAGGC 1105
Query 1139 AAGAGGAAAAGAGTTGA 1155
|||||||||||||||||
Sbjct 1106 AAGAGGAAAAGAGTTGA 1122
> AT3G18910.1 | Symbols: ETP2 | EIN2 targeting protein2 | chr3:6521719-6523043
FORWARD LENGTH=1325
Length=1325
Score = 494 bits (267), Expect = 1e-138
Identities = 898/1185 (76%), Gaps = 114/1185 (10%)
Strand=Plus/Plus
Query 36 AGCTTCCAAAGGTTTTGATAGAGGAGATACTCTGTTACGTACCGACGACATATCTCAAAC 95
|||||||||| | ||| ||||||||||||||||| ||| ||| | |||| ||| | ||
Sbjct 61 AGCTTCCAAATGACTTGGTAGAGGAGATACTCTGTCGCGTTCCGGCAACATCTCTGAGAC 120
Query 96 GATTACGTTCTACTTGCAAAGAATGGAACCGTTTATTCAAAGATGATCGGAGATTCGAAA 155
| ||||| || |||||||||| |||||||||||||||||||| |||||||| ||| | ||
Sbjct 121 GTTTACGATCGACTTGCAAAGCATGGAACCGTTTATTCAAAGGTGATCGGATATTAGCAA 180
Query 156 GAAAGCATTTTGATAAAGCCGCAAAGCAGTGTCTACCTCTCATATCGACCAA-G--T-AC 211
| ||||||||||| ||| ||||||| |||| | || |||| ||||| || | | |
Sbjct 181 GTAAGCATTTTGAAAAATCCGCAAAACAGT-T-TAGATCTC-TATCG-TTAAGGAATGAT 236
Query 212 CACAAGGTACCTTGTTT--GATGAGCCTCAATCTCCATGGAATTATG-CCATCTTTAGAG 268
|| ||| | || ||| ||| ||| ||||||||||||||| || | |||||| |||||
Sbjct 237 TAC-AGG-A--TT-TTTCCGATTAGCTTCAATCTCCATGGAAATA-GTCCATCTCTAGAG 290
Query 269 GTTGAAAGTAAGATTAGGCGAGTCGATTCAGATTCTAAGTATCCAATTAGTACTAAAATG 328
|| || ||| | | || | ||||| | |||||||| || || | | || | |
Sbjct 291 CTT--AA--AAG-TGA-GCTAATCGATCCTCATTCTAAGAATTCAGCT-G--CTCCATTC 341
Query 329 GAAAAT-TCTCGAGTCTTTCACTGTG-GCGGCTTGTTGTTATGCTCCTCCCAAGACGACG 386
| |||| ||||||||| ||||||||| | || |||||||| |||||||||||| ||||
Sbjct 342 G-AAATATCTCGAGTCATTCACTGTGAG-GGATTGTTGTTGTGCTCCTCCCAATTGGACG 399
Query 387 AATCT-GCAATCTTGGTTTGGAACCCGTTAACTGGTGAAAACAGGTGGATCAAAACCGG- 444
||||| | | || |||||||||| || ||||| ||||||| ||||||||||| ||||||
Sbjct 400 AATCTAG-AGTCGTGGTTTGGAATCCTTTAACCGGTGAAACCAGGTGGATCAGAACCGGC 458
Query 445 GAATCGTCGCGATAAAGGACGCACCTTTGTTCTTGGATACTACTACCAAGAAGACAA-AA 503
| || |||| | ||||| || | ||||| | | || |||||||||||| ||||||| |
Sbjct 459 G-ATTTTCGCCAAAAAGGCCGTAGCTTTGATGTCGGGTACTACTACCAAAAAGACAAGAG 517
Query 504 AACC-----C---TGCTACAAAATCTTGAGCTTTTATAGTGACAGC-AATGATTTCGAAA 554
| || | |||||||| ||||| ||| |||| ||| | | ||| |||| ||||
Sbjct 518 ATCCTGGATCAAGAGCTACAAACTCTTGTGCTATTATCGTGGTACCAAAT-ATTTTGAAA 576
Query 555 TCTTCGAGTTTAACTCTGATTCATGGAGGTTTATTGATGATA-TCT-G-TCCA-GGCTG- 609
||| ||| ||| ||||||||||||||||| || ||||||||| | | | |||| || |
Sbjct 577 TCTACGATTTTGACTCTGATTCATGGAGGATTCTTGATGATATTATCGCTCCACGGGGGA 636
Query 610 GTCCTTGCCAAACCCTTGTCAA--T-GCGTATCTTTGAAGGGAAAAACATACAT-GTTTG 665
|| ||| | | || | || | |||| ||| |||| ||||| || ||| | ||| |
Sbjct 637 GT-ATTG-GATA--CTCG-GAACTTAGCGTGTCTCTGAAAGGAAATACTTAC-TGGTTCG 690
Query 666 CTTTAGATGAAACA-AA-AAC-G---TG---TGTATCCTTGCTCAAATATGATTATTCA- 715
|| || || |||| || | | | | |||| |||||||||| ||||| || |
Sbjct 691 CTAAAGGTGTAACAGAAGAGCGGCCCCGCACCATATCATTGCTCAAATTTGATT-TTTAT 749
Query 716 ACAGAGAAATCTATACTTGTGCCTCTTCCATA-CAAGAGTCGT--TGTTTT-GAAGAGAC 771
|||||||||||| ||| ||||| |||||| || | |||||||| | |||| ||| |
Sbjct 750 ACAGAGAAATCTGTACCTGTGCTTCTTCCCTATC-AGAGTCGTCGTCTTTTCCAAGCTAG 808
Query 772 TAGTCTTTCCGTTGTTAGAGAAGAGAAACTTTCAGTGTTATTACAGAGAGATAAAAGTTG 831
||| ||||| |||||||||||||| |||||||| |||||||| ||| |||| ||||||
Sbjct 809 TAGCCTTTCTGTTGTTAGAGAAGATAAACTTTCTGTGTTATTGCAGCTAGATCAAAGTTC 868
Query 832 CAAGACTGAGATATGGGTGACAAA--TGA--GA--CCACCACCAAAGCGATGGTGGTGTC 885
|||||||||||||||||||||||| ||| || |||||||||| || | || ||
Sbjct 869 CAAGACTGAGATATGGGTGACAAATGTGATTGATGAGACCACCAAAG-GA--GCAGTTTC 925
Query 886 GTGGAGCAAGGTCTTGGCATTGGATTTGAGCCCTCTTCTTGAAATTTGGTATGATGGAAG 945
|||| ||||||||| ||||||||||||||||||| |||| | ||| || ||||||||||
Sbjct 926 TTGGACCAAGGTCTTAGCATTGGATTTGAGCCCTCATCTTCAGATTGGGAATGATGGAAG 985
Query 946 TTTCTTTCTTGAG-GAGGAGAAGAAAGTCATCATGATT-TCTAATAGATGGATAGAAGAA 1003
|||||| || | | ||||| ||||||||| ||||| || | | | | || ||| || | |
Sbjct 986 TTTCTTCCTAG-GCGAGGATAAGAAAGTCGTCATG-TTCTGTGAGAAATTGATTGATG-A 1042
Query 1004 G-ACAA-ATCCGAAGACAAT-CTATACATTGTTGGGGAGGACGCTAATAAAGCCACACAA 1060
| |||| | | ||||| || | ||||||||||||||||| |||| | |||| ||
Sbjct 1043 GAACAAGGT-CAAAGAC-ATGGTCTACATTGTTGGGGAGGA---TAATGTTGTCACAGAA 1097
Query 1061 GT---A--T--A-T--A--CAATCGATGGATGT-GGATCAGCTGTT-TATAATTATGTTC 1106
|| | | | | | ||| ||||||||| || ||| | || | |||||||||||
Sbjct 1098 GTGGGATTTGGAGTAGATGAAATGGATGGATGTCGG-GCAGTTATTCT-TAATTATGTTC 1155
Query 1107 CAAGTTTGGTTCAAATCGAGCGAGCTCGAGGCAAGAGGAAAAGAG 1151
|||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1156 CAAGTTTGGTTCAAATCGAGCGAGCTGGAGGCAACAGGAAAAGAG 1200
> AT3G18900.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: synergid; CONTAINS
InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527),
F-box associated interaction domain (InterPro:IPR017451),
Protein of unknown function DUF547 (InterPro:IPR006869);
BEST Arabidopsis thaliana protein match is: Protein
of unknown function, DUF547 (TAIR:AT5G66600.3). | chr3:6517181-6521019
FORWARD LENGTH=2500
Length=2500
Score = 252 bits (136), Expect = 7e-66
Identities = 295/366 (81%), Gaps = 33/366 (9%)
Strand=Plus/Plus
Query 638 TCTTTGAAGGGAAAAACATACAT-GTTTGCTTTAGATGAAACAAAAACG---TG---TGT 690
|||||||||||||| || ||| | ||| ||| ||| || |||| ||||| | |
Sbjct 1822 TCTTTGAAGGGAAATACTTAC-TGGTTGGCTATAGTTGTAACAGAAACGCCCCGCACCAT 1880
Query 691 ATCCTTGCTCAAATATGATTATTCAACAGAGAAATCTATACTTGTGCCTCTT--C---CA 745
||| |||||||| | ||||| ||||| |||||||||| |||||||||||||| | ||
Sbjct 1881 ATCATTGCTCAAGTTTGATTTTTCAATAGAGAAATCTGTACTTGTGCCTCTTCCCTATCA 1940
Query 746 TA--C--AAGAGTCGTTGTTTTGAAGAGACTAGTCTTTCCGTTGTTAGAGAAGAGAAACT 801
|| | |||||||| ||||||||| | ||| ||||||||||||||||||||||||||
Sbjct 1941 TAGTCTTCAGAGTCGTCGTTTTGAAGCTAGTAGCCTTTCCGTTGTTAGAGAAGAGAAACT 2000
Query 802 TTCAGTGTTATTACAGAGAGATAAAAGTTGCAAGACTGAGATATGGGTGACAA--A---T 856
||| |||||||||||| |||||| ||||| ||||||||||||||||||||||| | |
Sbjct 2001 TTCTGTGTTATTACAGCGAGATATAAGTTCCAAGACTGAGATATGGGTGACAAGTAAGAT 2060
Query 857 -GA-GACCACCACCAAAGCGATGGTGGTGTCGTGGAGCAAGGTCTTGGCATTGGATTTGA 914
|| ||| |||||||||| ||||| | | ||||||||| |||| |||||||||||||
Sbjct 2061 TGATGAC-ACCACCAAAG---TGGTG-TCT--TGGAGCAAGATCTTAGCATTGGATTTGA 2113
Query 915 GCCCTCTTCTTGAAATTTGGTATGATGGAAGTTTCTTTCTTGAG-GAGGAGAAGAAAGTC 973
|||||| |||| | |||||| |||||| ||||||||| | | | || ||||||||||||
Sbjct 2114 GCCCTCATCTTCAGATTTGGAATGATGCAAGTTTCTTGATAG-GCGAAGAGAAGAAAGTC 2172
Query 974 ATCATG 979
||||||
Sbjct 2173 ATCATG 2178
> AT3G22730.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8031341-8032459 REVERSE LENGTH=1119
Length=1119
Score = 56.5 bits (30), Expect = 6e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1097 AATTATGTTCCAAGTTTGGTTCAAATCGAG 1126
||||||||||||||||||||||||||||||
Sbjct 1063 AATTATGTTCCAAGTTTGGTTCAAATCGAG 1092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58031830020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5