BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg929832 Length=1182 Score E Sequences producing significant alignments: (Bits) Value AT3G19410.1 | Symbols: | F-box and associated interaction doma... 1162 0.0 AT3G18910.1 | Symbols: ETP2 | EIN2 targeting protein2 | chr3:65... 494 1e-138 AT3G18900.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 252 7e-66 AT3G22730.1 | Symbols: | F-box and associated interaction doma... 56.5 6e-07 > AT3G19410.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:6729585-6730706 FORWARD LENGTH=1122 Length=1122 Score = 1162 bits (629), Expect = 0.0 Identities = 991/1157 (86%), Gaps = 59/1157 (5%) Strand=Plus/Plus Query 23 ATGACGATACCTGAGCTTCCAAAGGTTTTGATAGAGGAGATACTCTGTTACGTACCGACG 82 ||||||||||| ||||| ||||||| ||||||||||||||||||||||||||| ||| || Sbjct 1 ATGACGATACCCGAGCTGCCAAAGGATTTGATAGAGGAGATACTCTGTTACGTTCCGGCG 60 Query 83 ACATATCTCAAACGATTACGTTCTACTTGCAAAGAATGGAACCGTTTATTCAAAGATGAT 142 |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 61 ACATATCTGAAACGATTACGTTCTACTTGCAAAGGATGGAACCGTTTATTCAAAGATGAT 120 Query 143 CGGAGATTCG-AAAGAAAGCATTTTGATAAAGCCGCAAAGCAGTGTCTACCTCTCATATC 201 || ||||||| || |||||||| ||| |||||||||||||||| |||||| ||||| || Sbjct 121 CGAAGATTCGCCAA-AAAGCATTATGACAAAGCCGCAAAGCAGTTTCTACCCCTCATGTC 179 Query 202 GACCAAGTACCACAAGGTA-CCTTGTTTGATGAGCCTCAATCTCCATGGAATTATGCCAT 260 ||| | | | || | | | |||| ||||||| ||||||||||||||| || |||| Sbjct 180 AACC-A--A-C-GAA-G-AGCTTTGTGCGATGAGCGTCAATCTCCATGGAACGATACCAT 232 Query 261 CTTTAGAGGTTGAAAG-TAAG-ATTAGGCGAGTCGATTCAGATTCTAAGTATCCAATTAG 318 ||||||||| | |||| |||| || ||| | ||| ||||||||||||| | ||| | Sbjct 233 CTTTAGAGG-TAAAAGATAAGCCTT-GGCTATTCGTTTCAGATTCTAAG----C-ATT-G 284 Query 319 TACTAAAATGGAAAAT-TCTCGAGTCTTTCACTGTGGCGGCTTGTTGTTATGCTCCTCCC 377 | | || | |||| |||||| |||||||| ||||||||||||||||||||| ||||| Sbjct 285 ---TGATATCG-AAATATCTCGAATCTTTCACAGTGGCGGCTTGTTGTTATGCTTCTCCC 340 Query 378 AAGACGACG-AATCTGCAATCTTGGTTTGGAACCCGTTAACTGGTGAAAACAGGTGGA-T 435 ||||| || ||| | ||||| | |||||||||||||||||| |||||| ||||| || | Sbjct 341 GAGACGGCGAAAT-TTCAATCATAGTTTGGAACCCGTTAACTAGTGAAACCAGGTTGATT 399 Query 436 CAAAACCGGGAATCGTCGCGATAAAGGACGCACCTTTGTTCTTGGATACTACTACCAAGA 495 | |||| |||||||||||||||||||||||| |||||||||||||||||| | ||||| Sbjct 400 C-GAACCCGGAATCGTCGCGATAAAGGACGCAACTTTGTTCTTGGATACTA-T--CAAGA 455 Query 496 AGACAAAAAACCCTGCTACAAAATCTTGAGCTTTTATAGTGACAGCAATGATTTCGAAAT 555 |||||||||| ||| |||||||||||||||||||||| ||| ||||| ||||||||||| Sbjct 456 AGACAAAAAAACCTACTACAAAATCTTGAGCTTTTATCTTGATAGCAAAGATTTCGAAAT 515 Query 556 CTTCGAGTTTAACTCTGATTCATGGAGGTTTATTGATGATATCTGTCCAGGCTGGTCCTT 615 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 516 CTTCGAGTTTAACTCTGATTCATGGAGGTTTATTGATGATATCTGTCCAGGCTTGTCCTT 575 Query 616 GCCAAACCCTTG-TCAATGCGTATCTTTGAAGGGAAAAACATACATGTTTGCTTTAGATG 674 || | || || | ||||||||| |||||||||||||| ||||||||||||||| |||||| Sbjct 576 GCTATACTCT-GATCAATGCGTGTCTTTGAAGGGAAATACATACATGTTTGCTATAGATG 634 Query 675 AAACAAAAACGTGTGTATCCTTGCTCAAATATGATTATTCAACAGAGAAATCTATACTTG 734 | | || |||| |||||||||||||||||||| ||||||||||| |||| | | || Sbjct 635 A--CTTAA--GTGT--ATCCTTGCTCAAATATGATTTTTCAACAGAGACATCTGTTCCTG 688 Query 735 TGCCTCTTCCATACAAGAGTCGTTGTTTTGAAGAGACTAGTCTTTCCGTTGTTAGAGAAG 794 | |||||||| || || ||||||| |||||||| | |||||||||||| |||||||||| Sbjct 689 TACCTCTTCCCTATAAAAGTCGTTCTTTTGAAGCTATTAGTCTTTCCGTGGTTAGAGAAG 748 Query 795 AGAAACTTTCAGTGTTATTACAGAGAGATAAAAGTT-GCAAGACTGAGATATGGGTGACA 853 |||| || || |||||||||||| |||||||||||| | || |||||||||||||||||| Sbjct 749 AGAAGCTCTCTGTGTTATTACAGCGAGATAAAAGTTCGAAA-ACTGAGATATGGGTGACA 807 Query 854 AATG--A--GA-----CCACCACCAAAGCGATGGTGGTGTCGTGGAGCAAGGTCTTGGCA 904 |||| | || |||||||||||| ||||||||||||||||||||||||||| || Sbjct 808 AATGTGATTGATGAAACCACCACCAAAGTGATGGTGGTGTCGTGGAGCAAGGTCTTATCA 867 Query 905 TTGGATTTGAGCCCTCTTCTTGAAATTTGGTATG-ATGGAAGTTTCTTTCTTGAGGAGGA 963 ||||||||||||||| |||| ||||| |||||| | | ||||||||| || || || || Sbjct 868 TTGGATTTGAGCCCTGATCTTAAAATTAGGTATGGA-GAAAGTTTCTTGCTGGACGAAGA 926 Query 964 GAAGAAAGTCATCATGATTTCTAATAGAT-GGATAGAAGAAGA---CAAATCCGAAGACA 1019 ||||||||| |||||||||| ||||| | |||| |||||||| |||||||||||||| Sbjct 927 GAAGAAAGTGATCATGATTTTTAATA-ACCGGATGGAAGAAGAGAACAAATCCGAAGACA 985 Query 1020 ATCTATACATTGTTGGGGAGGACGCTAATAAAGCCACACAAGTATATACAATCGATGGAT 1079 | ||||||||| ||||||| |||| |||||||||||||||||||||||||||| |||||| Sbjct 986 AACTATACATTATTGGGGACGACGATAATAAAGCCACACAAGTATATACAATCCATGGAT 1045 Query 1080 GTGGATCAGCTGTTTATAATTATGTTCCAAGTTTGGTTCAAATCGAGCGA-GCTCGAGGC 1138 |||| ||||||||| ||| ||| |||||||||||||||||||||||| | |||| |||| Sbjct 1046 ATGGACCAGCTGTTTTTAACTATTTTCCAAGTTTGGTTCAAATCGAGCAAAGCTCTAGGC 1105 Query 1139 AAGAGGAAAAGAGTTGA 1155 ||||||||||||||||| Sbjct 1106 AAGAGGAAAAGAGTTGA 1122 > AT3G18910.1 | Symbols: ETP2 | EIN2 targeting protein2 | chr3:6521719-6523043 FORWARD LENGTH=1325 Length=1325 Score = 494 bits (267), Expect = 1e-138 Identities = 898/1185 (76%), Gaps = 114/1185 (10%) Strand=Plus/Plus Query 36 AGCTTCCAAAGGTTTTGATAGAGGAGATACTCTGTTACGTACCGACGACATATCTCAAAC 95 |||||||||| | ||| ||||||||||||||||| ||| ||| | |||| ||| | || Sbjct 61 AGCTTCCAAATGACTTGGTAGAGGAGATACTCTGTCGCGTTCCGGCAACATCTCTGAGAC 120 Query 96 GATTACGTTCTACTTGCAAAGAATGGAACCGTTTATTCAAAGATGATCGGAGATTCGAAA 155 | ||||| || |||||||||| |||||||||||||||||||| |||||||| ||| | || Sbjct 121 GTTTACGATCGACTTGCAAAGCATGGAACCGTTTATTCAAAGGTGATCGGATATTAGCAA 180 Query 156 GAAAGCATTTTGATAAAGCCGCAAAGCAGTGTCTACCTCTCATATCGACCAA-G--T-AC 211 | ||||||||||| ||| ||||||| |||| | || |||| ||||| || | | | Sbjct 181 GTAAGCATTTTGAAAAATCCGCAAAACAGT-T-TAGATCTC-TATCG-TTAAGGAATGAT 236 Query 212 CACAAGGTACCTTGTTT--GATGAGCCTCAATCTCCATGGAATTATG-CCATCTTTAGAG 268 || ||| | || ||| ||| ||| ||||||||||||||| || | |||||| ||||| Sbjct 237 TAC-AGG-A--TT-TTTCCGATTAGCTTCAATCTCCATGGAAATA-GTCCATCTCTAGAG 290 Query 269 GTTGAAAGTAAGATTAGGCGAGTCGATTCAGATTCTAAGTATCCAATTAGTACTAAAATG 328 || || ||| | | || | ||||| | |||||||| || || | | || | | Sbjct 291 CTT--AA--AAG-TGA-GCTAATCGATCCTCATTCTAAGAATTCAGCT-G--CTCCATTC 341 Query 329 GAAAAT-TCTCGAGTCTTTCACTGTG-GCGGCTTGTTGTTATGCTCCTCCCAAGACGACG 386 | |||| ||||||||| ||||||||| | || |||||||| |||||||||||| |||| Sbjct 342 G-AAATATCTCGAGTCATTCACTGTGAG-GGATTGTTGTTGTGCTCCTCCCAATTGGACG 399 Query 387 AATCT-GCAATCTTGGTTTGGAACCCGTTAACTGGTGAAAACAGGTGGATCAAAACCGG- 444 ||||| | | || |||||||||| || ||||| ||||||| ||||||||||| |||||| Sbjct 400 AATCTAG-AGTCGTGGTTTGGAATCCTTTAACCGGTGAAACCAGGTGGATCAGAACCGGC 458 Query 445 GAATCGTCGCGATAAAGGACGCACCTTTGTTCTTGGATACTACTACCAAGAAGACAA-AA 503 | || |||| | ||||| || | ||||| | | || |||||||||||| ||||||| | Sbjct 459 G-ATTTTCGCCAAAAAGGCCGTAGCTTTGATGTCGGGTACTACTACCAAAAAGACAAGAG 517 Query 504 AACC-----C---TGCTACAAAATCTTGAGCTTTTATAGTGACAGC-AATGATTTCGAAA 554 | || | |||||||| ||||| ||| |||| ||| | | ||| |||| |||| Sbjct 518 ATCCTGGATCAAGAGCTACAAACTCTTGTGCTATTATCGTGGTACCAAAT-ATTTTGAAA 576 Query 555 TCTTCGAGTTTAACTCTGATTCATGGAGGTTTATTGATGATA-TCT-G-TCCA-GGCTG- 609 ||| ||| ||| ||||||||||||||||| || ||||||||| | | | |||| || | Sbjct 577 TCTACGATTTTGACTCTGATTCATGGAGGATTCTTGATGATATTATCGCTCCACGGGGGA 636 Query 610 GTCCTTGCCAAACCCTTGTCAA--T-GCGTATCTTTGAAGGGAAAAACATACAT-GTTTG 665 || ||| | | || | || | |||| ||| |||| ||||| || ||| | ||| | Sbjct 637 GT-ATTG-GATA--CTCG-GAACTTAGCGTGTCTCTGAAAGGAAATACTTAC-TGGTTCG 690 Query 666 CTTTAGATGAAACA-AA-AAC-G---TG---TGTATCCTTGCTCAAATATGATTATTCA- 715 || || || |||| || | | | | |||| |||||||||| ||||| || | Sbjct 691 CTAAAGGTGTAACAGAAGAGCGGCCCCGCACCATATCATTGCTCAAATTTGATT-TTTAT 749 Query 716 ACAGAGAAATCTATACTTGTGCCTCTTCCATA-CAAGAGTCGT--TGTTTT-GAAGAGAC 771 |||||||||||| ||| ||||| |||||| || | |||||||| | |||| ||| | Sbjct 750 ACAGAGAAATCTGTACCTGTGCTTCTTCCCTATC-AGAGTCGTCGTCTTTTCCAAGCTAG 808 Query 772 TAGTCTTTCCGTTGTTAGAGAAGAGAAACTTTCAGTGTTATTACAGAGAGATAAAAGTTG 831 ||| ||||| |||||||||||||| |||||||| |||||||| ||| |||| |||||| Sbjct 809 TAGCCTTTCTGTTGTTAGAGAAGATAAACTTTCTGTGTTATTGCAGCTAGATCAAAGTTC 868 Query 832 CAAGACTGAGATATGGGTGACAAA--TGA--GA--CCACCACCAAAGCGATGGTGGTGTC 885 |||||||||||||||||||||||| ||| || |||||||||| || | || || Sbjct 869 CAAGACTGAGATATGGGTGACAAATGTGATTGATGAGACCACCAAAG-GA--GCAGTTTC 925 Query 886 GTGGAGCAAGGTCTTGGCATTGGATTTGAGCCCTCTTCTTGAAATTTGGTATGATGGAAG 945 |||| ||||||||| ||||||||||||||||||| |||| | ||| || |||||||||| Sbjct 926 TTGGACCAAGGTCTTAGCATTGGATTTGAGCCCTCATCTTCAGATTGGGAATGATGGAAG 985 Query 946 TTTCTTTCTTGAG-GAGGAGAAGAAAGTCATCATGATT-TCTAATAGATGGATAGAAGAA 1003 |||||| || | | ||||| ||||||||| ||||| || | | | | || ||| || | | Sbjct 986 TTTCTTCCTAG-GCGAGGATAAGAAAGTCGTCATG-TTCTGTGAGAAATTGATTGATG-A 1042 Query 1004 G-ACAA-ATCCGAAGACAAT-CTATACATTGTTGGGGAGGACGCTAATAAAGCCACACAA 1060 | |||| | | ||||| || | ||||||||||||||||| |||| | |||| || Sbjct 1043 GAACAAGGT-CAAAGAC-ATGGTCTACATTGTTGGGGAGGA---TAATGTTGTCACAGAA 1097 Query 1061 GT---A--T--A-T--A--CAATCGATGGATGT-GGATCAGCTGTT-TATAATTATGTTC 1106 || | | | | | ||| ||||||||| || ||| | || | ||||||||||| Sbjct 1098 GTGGGATTTGGAGTAGATGAAATGGATGGATGTCGG-GCAGTTATTCT-TAATTATGTTC 1155 Query 1107 CAAGTTTGGTTCAAATCGAGCGAGCTCGAGGCAAGAGGAAAAGAG 1151 |||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 1156 CAAGTTTGGTTCAAATCGAGCGAGCTGGAGGCAACAGGAAAAGAG 1200 > AT3G18900.2 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: synergid; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451), Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G66600.3). | chr3:6517181-6521019 FORWARD LENGTH=2500 Length=2500 Score = 252 bits (136), Expect = 7e-66 Identities = 295/366 (81%), Gaps = 33/366 (9%) Strand=Plus/Plus Query 638 TCTTTGAAGGGAAAAACATACAT-GTTTGCTTTAGATGAAACAAAAACG---TG---TGT 690 |||||||||||||| || ||| | ||| ||| ||| || |||| ||||| | | Sbjct 1822 TCTTTGAAGGGAAATACTTAC-TGGTTGGCTATAGTTGTAACAGAAACGCCCCGCACCAT 1880 Query 691 ATCCTTGCTCAAATATGATTATTCAACAGAGAAATCTATACTTGTGCCTCTT--C---CA 745 ||| |||||||| | ||||| ||||| |||||||||| |||||||||||||| | || Sbjct 1881 ATCATTGCTCAAGTTTGATTTTTCAATAGAGAAATCTGTACTTGTGCCTCTTCCCTATCA 1940 Query 746 TA--C--AAGAGTCGTTGTTTTGAAGAGACTAGTCTTTCCGTTGTTAGAGAAGAGAAACT 801 || | |||||||| ||||||||| | ||| |||||||||||||||||||||||||| Sbjct 1941 TAGTCTTCAGAGTCGTCGTTTTGAAGCTAGTAGCCTTTCCGTTGTTAGAGAAGAGAAACT 2000 Query 802 TTCAGTGTTATTACAGAGAGATAAAAGTTGCAAGACTGAGATATGGGTGACAA--A---T 856 ||| |||||||||||| |||||| ||||| ||||||||||||||||||||||| | | Sbjct 2001 TTCTGTGTTATTACAGCGAGATATAAGTTCCAAGACTGAGATATGGGTGACAAGTAAGAT 2060 Query 857 -GA-GACCACCACCAAAGCGATGGTGGTGTCGTGGAGCAAGGTCTTGGCATTGGATTTGA 914 || ||| |||||||||| ||||| | | ||||||||| |||| ||||||||||||| Sbjct 2061 TGATGAC-ACCACCAAAG---TGGTG-TCT--TGGAGCAAGATCTTAGCATTGGATTTGA 2113 Query 915 GCCCTCTTCTTGAAATTTGGTATGATGGAAGTTTCTTTCTTGAG-GAGGAGAAGAAAGTC 973 |||||| |||| | |||||| |||||| ||||||||| | | | || |||||||||||| Sbjct 2114 GCCCTCATCTTCAGATTTGGAATGATGCAAGTTTCTTGATAG-GCGAAGAGAAGAAAGTC 2172 Query 974 ATCATG 979 |||||| Sbjct 2173 ATCATG 2178 > AT3G22730.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:8031341-8032459 REVERSE LENGTH=1119 Length=1119 Score = 56.5 bits (30), Expect = 6e-07 Identities = 30/30 (100%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1097 AATTATGTTCCAAGTTTGGTTCAAATCGAG 1126 |||||||||||||||||||||||||||||| Sbjct 1063 AATTATGTTCCAAGTTTGGTTCAAATCGAG 1092 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58031830020 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5