BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929841
Length=1772
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19490.1 | Symbols: ATNHD1, NHD1 | sodium:hydrogen antiporte... 2867 0.0
AT1G49810.1 | Symbols: ATNHD2, NHD2 | Na+/H+ antiporter 2 | chr... 963 0.0
> AT3G19490.1 | Symbols: ATNHD1, NHD1 | sodium:hydrogen antiporter
1 | chr3:6754615-6758261 REVERSE LENGTH=2125
Length=2125
Score = 2867 bits (1552), Expect = 0.0
Identities = 1700/1773 (96%), Gaps = 3/1773 (0%)
Strand=Plus/Plus
Query 3 TCTTTCTCTGGTGTTCGCCGATGGCGGTGTTACCTATCGGCTCTCACTTGGCACCGCCGC 62
||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||
Sbjct 115 TCTTTCTCTGGTGTTCGCCAATGGCGGTGTTTCCTATCGGTTCTCACTTTGCACCGCCGC 174
Query 63 ATCAGTTGACGAAGAGACACGCCGTCGCGACTTCATCACCTATCTCCATCTCCACCCGAT 122
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 175 ATCAGTTGACGAAGAGACACGTCATCGCGACTTCATCACCTATCTCCATCTCCACCCGAT 234
Query 123 TGCCGCAAAATGTCTCATTTTCGAAAGTATCTGGAGTTACAGGCT---CGAGGTTGTCCA 179
||||||||||||| || |||||||||||||||||||||||||||| ||||||| ||||
Sbjct 235 TGCCGCAAAATGTTTCCTTTTCGAAAGTATCTGGAGTTACAGGCTCGACGAGGTTATCCA 294
Query 180 AACATGGTGTTCTCGTCAGGGCCGAGGATAAGATAAGAAGCTCTTCTTCTCCTTCTTCTC 239
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 295 AACATGGTGTTCTCGTGAGGGCCGAGGATAAGATAAGGAGCTCTTCTTCTCCTTCTTCTC 354
Query 240 TCGATGAACCAATCGATGAGGATTTGATGGACTCATCAGGATCATGTGACCCATTATGCT 299
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 355 TCGATGAACCAATCGATGAGGATTTGATGGACTCATCAGGATTATGTGACCCGTTATGCT 414
Query 300 CGGTTGATGAACCTAGTTCGAGTTACTTCGAGGCGAATTATCAGCCAAAGACAGATATAA 359
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 415 CGGTTGATGAACCTAGTTCAAGTTACTTTGAGGCGAATTATCAGCCAAAGACAGATATAA 474
Query 360 TCAAAGCTCTTGCTATTCTTGCTGCAGCTCTTACAGGAACAGCTGCTATTAATCATTCCT 419
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 475 TCAAAGCTCTTGCTATTCTTGCAGCAGCTCTTACAGGAACAGCTGCCATTAACCATTCCT 534
Query 420 GGGTCGCTGCTAATCAGGATGTTGCTATGGCATTGTTGTTTGGAATAGGATACGCCGGAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 535 GGGTCGCTGCTAATCAGGATGTTGCTATGGCATTGTTGTTTGGAATAGGATACGCTGGCA 594
Query 480 TCATCTTCGAAGAGTCTTTAGCTTTTAATAAAAGTGGAATAGGACTGTTGATGGCTGTGA 539
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 595 TCATCTTTGAAGAGTCTTTAGCTTTTAATAAAAGTGGAATAGGACTTTTGATGGCTGTGA 654
Query 540 GTTTGTGGGTTGTGCGGAGCATAGGGGCTCCTTCAACTGAAATAGCTGTTTTAGATCTTC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GTTTGTGGGTTGTGCGGAGCATAGGGGCTCCTTCAACTGAAATAGCTGTTTTAGATCTTC 714
Query 600 AACATGCAACAGCTGAAGTTAGTGAAATCGTATTTTTCTTGCTTGGCGCAATGACCATTG 659
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 715 AACATGCAACAGCTGAAGTTAGTGAAATAGTATTTTTCTTGCTTGGCGCAATGACCATTG 774
Query 660 TGGAGATAGTTGATGCTCACCAAGGATTTAAGTTGGTTACAGACAGTATCACCACTCGGA 719
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 775 TGGAGATAGTTGATGCTCACCAAGGGTTTAAGTTGGTTACAGACAATATCACCACTCGGA 834
Query 720 AGCCAAAGACTCTTTTATGGGTGGTTGGCTTTGTGACTTTCTTTCTCAGTTCGATTCTAG 779
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 AGCCAAAGACACTTTTATGGGTGGTTGGCTTTGTGACTTTCTTTCTCAGTTCGATTCTAG 894
Query 780 ACAATCTGACCTCTACCATTGTCATGGTTTCTTTACTAAGGAAACTGGTTCCTCAATCAG 839
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 895 ACAATCTGACCTCTACCATTGTCATGGTTTCTTTAATAAGGAAACTGGTTCCACAATCAG 954
Query 840 AGTACCGCAAACTTCTAGGAGCTGTTGTGGTTATAGCAGCAAATGCTGGAGGAGCATGGA 899
||||||||||||||||||||| ||| || || |||||||||||||| |||||||||||||
Sbjct 955 AGTACCGCAAACTTCTAGGAGGTGTGGTAGTGATAGCAGCAAATGCAGGAGGAGCATGGA 1014
Query 900 CTCCAATTGGTGATGTTACTACAACTATGCTATGGATTCATGGTCAGATAACAACCTTGC 959
||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||
Sbjct 1015 CTCCAATTGGTGATGTTACTACAACTATGTTATGGATTCATGGTCAGATATCCACCTTGC 1074
Query 960 CGACTATGCAGGGCCTTTTTATACCTTCGGCTGTTTCTCTTGCTGTTCCACTAGCCCTCA 1019
|||||||| ||| ||||||| ||||||||| ||| |||||||||||||||||||||||||
Sbjct 1075 CGACTATGAAGGACCTTTTTCTACCTTCGGTTGTGTCTCTTGCTGTTCCACTAGCCCTCA 1134
Query 1020 TGTCCTTGACCAGTGAGGTAAATGGAAAGGGACAGGATTCTTCAGATGTATTGGCTTCTG 1079
|||| ||||||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct 1135 TGTCTTTGACCAGTGAGGTAAATGGAAAGGAACAGGATCCTAAAGATGTATTGGCTTCTG 1194
Query 1080 AAAAGATGGCTCCAAGAGGGAAGCTAGTTTTTGGAGTTGGCCTTGGAGCATTGGTATTTG 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1195 AAAAGATGGCTCCAAGAGGGAAGCTAGTTTTTGGAGTTGGCCTTGGAGCATTGGTTTTTG 1254
Query 1140 TTCCAGTCTTTAAGGCTCTAACTGGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTG 1199
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TTCCAGTCTTTAAAGCTCTAACTGGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTG 1314
Query 1200 GAGTTCTTTGGATCTTGACAGATGCCATTCATTACGGGGAATCAGAAAGACAAAAGCTCA 1259
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1315 GAGTTCTTTGGATCTTGACAGATGCCATTCATTACGGTGAATCAGAAAGACAAAAGCTCA 1374
Query 1260 AAGTACCTCAGGCCTTGTCTCGAATCGACACACAAGGCGCTCTGTTTTTCCTCGGAATTC 1319
|||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 1375 AAGTACCTCAAGCCTTATCTCGAATAGACACACAAGGTGCTCTGTTTTTCCTCGGGATTC 1434
Query 1320 TTTTATCTGTAAGCAGCCTTGAGGCCGCTGGGATCCTTCGGGAGATTGCAAACTACCTTG 1379
||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 1435 TTTTATCCGTAAGCAGCCTTGAGGCAGCTGGGATACTCCGGGAGATTGCAAACTACCTTG 1494
Query 1380 ATGCCAATATACCCAACGTTGAGCTCATTGCAAGTGCTATCGGTGTTGTATCTGCAATCA 1439
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1495 ATGCCAATATACCCAACGTTGAGCTCATTGCAAGTGCTATCGGTGTTGTATCAGCAATCA 1554
Query 1440 TAGACAATGTTCCATTGGTTGCAGCGACTATGGGGATGTATGATCTCACATCGTTCCCTC 1499
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TAGACAATGTTCCACTGGTTGCAGCGACTATGGGGATGTATGATCTCACATCGTTCCCTC 1614
Query 1500 AAGATTCTGAATTTTGGCAGCTCATTGCATTCTGTGCCGGCACTGGTGGTTCGATGCTTG 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 AAGATTCTGAATTTTGGCAGCTCATTGCATTCTGTGCCGGCACTGGTGGTTCGATGCTTG 1674
Query 1560 TCATTGGTTCTGCTGCTGGTGTAGCCTTCATGGGGATGGAGAAAGTCGATTTCTTTTGGT 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 TCATTGGTTCTGCTGCTGGTGTAGCCTTCATGGGGATGGAGAAAGTCGATTTCTTTTGGT 1734
Query 1620 ACTTCAGAAAGGTTAGTGGTTTTGCTTTTGCTGGTTATGCTGCTGGTATCGCAGCTTATC 1679
| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1735 ATTTCCGAAAGGTTAGTGGTTTTGCTTTTGCTGGCTATGCTGCTGGTATCGCAGCTTATC 1794
Query 1680 TGGCGGTTCATAATCTTCATTTCGAGATCCCAACAACGGTGGCTCAGATCCCATTTCTCA 1739
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1795 TGGCCGTTCATAATCTTCATTTCGAGATCCCAACAACTGTGGCTCAGATCCCATTTCTCA 1854
Query 1740 CTGGTTCCTAAGCTGCATTAATCTCTGTAATTC 1772
||||||| || ||| ||| |||||||||| |||
Sbjct 1855 CTGGTTCATAGGCTCCATCAATCTCTGTATTTC 1887
> AT1G49810.1 | Symbols: ATNHD2, NHD2 | Na+/H+ antiporter 2 | chr1:18440013-18442237
REVERSE LENGTH=1263
Length=1263
Score = 963 bits (521), Expect = 0.0
Identities = 1035/1279 (81%), Gaps = 52/1279 (4%)
Strand=Plus/Plus
Query 446 ATGGCATTGTTGTTTGGAATAGGATACGCCG--GAATCATCTTCGAAGAGTCTTTAGCTT 503
|||||||||||||||||||||||||| | | | ||||||||||| ||||||||| | |
Sbjct 1 ATGGCATTGTTGTTTGGAATAGGATATG-TGTTG-ATCATCTTCGAGGAGTCTTTATCAT 58
Query 504 TTAATAAAAGTGGAATAGGACTGTTGATGGCTGTGAGTTTGTGGGTTGTGCGGAGCATAG 563
||| |||||| ||||||| ||| |||||||| || ||||||||||||||||| ||||| |
Sbjct 59 TTAGTAAAAGCGGAATAGCACTTTTGATGGCCGTTAGTTTGTGGGTTGTGCGAAGCATCG 118
Query 564 GGGCTCCTTCAACTGAAATAGCTGTTTTAGATCTTCAACATGCAAC-AGCTGAAGTTAGT 622
| || | | | ||||| | | |||||| |||||||| ||||| || |||||||||
Sbjct 119 AGACTTC-TGTA--GAAATTGTTACTTTAGAGCTTCAACACGCAACAAG-TGAAGTTAGC 174
Query 623 GAAATCGTATTTTTCTTGCTTGGCGCAATGACCATTGTGGAGATAGTTGATGCTCACCAA 682
|||| || || | | |||| || ||||||||||||||||| ||| |||||||||| |||
Sbjct 175 CAAATAGTGTTCTACATGCTCGGAGCAATGACCATTGTGGAAATAATTGATGCTCATCAA 234
Query 683 GGATTTAAGTTGGTTACAGACAGTATCACCA-CTCGGAAGCCAAAGACT-CTTTTATGGG 740
||||||||| |||||||||| |||| | || || |||| || |||| | ||||||||||
Sbjct 235 GGATTTAAGCTGGTTACAGATTGTAT-AACATCTAGGAAACCGAAGA-TACTTTTATGGG 292
Query 741 TGGTTGGCTTT-GTGA-CTTTCTTTCTCAGTTC-GATTCTAGACAATCTGACCTCTACCA 797
|| |||| ||| | || |||| || ||||| || | |||| ||||| || || ||||| |
Sbjct 293 TGATTGG-TTTCGCGACCTTT-TTCCTCAGCTCTG-TTCTTGACAACCTAACATCTACTA 349
Query 798 TTGTCATGGTTTCTTTACTAAGGAA-ACTGGTTCCTCAATCAGAGTACCGCAAACTTCTA 856
|||| ||||| || |||| | ||| ||| |||||| |||||| |||||||||||| ||
Sbjct 350 TTGTAATGGTGTCGCTACTGA-GAAGACTAATTCCTCCATCAGAATACCGCAAACTTTTA 408
Query 857 GGAGCTGTTGTGGTTATAGCAGCAAATGCTGGAGGAGCATGGACTCCAATTGGTGATGTT 916
||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 409 GGAGCAGTTGTGGTTATAGCAGCAAATGCAGGAGGAGCTTGGACTCCTATTGGTGATGTT 468
Query 917 ACTACAACTATGCTATGGATTCATGGTCAGATAACAACCTTGCCGACTATGCAGGGCCTT 976
|||||||||||||||||||| ||||| || ||| |||| || ||||||| || ||||
Sbjct 469 ACTACAACTATGCTATGGATACATGGCCATATATCAACATTTTCGACTATAAAGAACCTT 528
Query 977 TTTATACCTTCGGCTG-TTTCTCTTGCTGTTCCACTAGCCCTCATGTCCTTGACCAGTGA 1035
||| ||||||| || | ||||||||| ||||||||| || |||||||| |||||||||||
Sbjct 529 TTTTTACCTTCAGC-GATTTCTCTTGTTGTTCCACTGGCTCTCATGTCATTGACCAGTGA 587
Query 1036 GGTAAATGGAAAGGGAC--AGGA-T--T-CTTCA-GATGTATTGGCTTCTGAAAAGAT-G 1087
|||| |||||| ||||| | | | | || || || |||| |||| || | | | |
Sbjct 588 GGTACATGGAATGGGACTAAATACTCCTCCTACACCAT-TATTAGCTTATG-ATCG-TAG 644
Query 1088 -GCTCCAAGAGGGAAGCTAGTTTTTGGAGTTGGCCTTGGAGCATTGGTATTTGTTCCAGT 1146
||||||||||| ||||| || ||||||||||| ||||||| ||| | ||||| ||| |
Sbjct 645 TGCTCCAAGAGGAAAGCTTGTATTTGGAGTTGGTTTTGGAGCTTTGCTTTTTGTCCCACT 704
Query 1147 CTTTAAGGC-TCTAACTGGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTGGAGTTC 1205
|||||| | | |||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 705 GTTTAAGTCAT-TAACCGGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTGGAGT-C 762
Query 1206 -TTTGGATCTTGACAGATGCCATTCATTACGGGGAATCAGAAAGACAAAAGCTCAAAGTA 1264
||||||| |||||||||| ||| ||||| || || | ||| |||||| | || ||| |
Sbjct 763 ATTTGGATTTTGACAGATGTCATCCATTATGGTGACTTAGAGAGACAACACCTAAAACTT 822
Query 1265 CCTCAGGCCTTGTCTCGAATCGACACACAAGGCGCTCTGTTTTTCCTCGGAATTCTTT-T 1323
|| || || |||||||| || || ||||||| ||| | |||||||| || ||| || |
Sbjct 823 CCACATGCTTTGTCTCGGATTGATTCACAAGGAGCTTTATTTTTCCTTGGGATT-TTGCT 881
Query 1324 ATCTGTAAGCAGCCTTGAGGCCGCTGGGATCCTTCGG-GAGATTGCAAACTACCTTGATG 1382
|||| | ||||| ||||| || |||||||| || | | |||||| ||||| |||||||
Sbjct 882 ATCTATGAGCAGTCTTGATGCGGCTGGGATTCT-CAAAGTGATTGCGAACTATCTTGATG 940
Query 1383 C-CAATATACCCAACGTTGAGCTCATTGCAAGTGCTATCGGTGTTGTATCTGCAATCATA 1441
| || |||| |||| ||||| || ||||||||| ||| || || ||||| || ||||||
Sbjct 941 CTCA-TATAGCCAATGTTGAACTGATTGCAAGTATTATTGGAGTGGTATCAGCCATCATA 999
Query 1442 GACAATGTTCCATTGGTTGCAGCGACTATGGGGATGTATGATCTCACATCGTTCCCTCAA 1501
|| ||||| ||||||||||| || || |||||||||||||| ||| || | |||||||||
Sbjct 1000 GATAATGTCCCATTGGTTGCGGCAACAATGGGGATGTATGACCTCTCAACATTCCCTCAA 1059
Query 1502 GATTCTGAATTTTGGCAGCTCATTGCATTCTGTGCCGGCACTGGTGGTTCGATGCTTGTC 1561
|||||||| |||||||| |||||| |||| || || || || || ||||| |||||| |
Sbjct 1060 GATTCTGAGTTTTGGCAACTCATTTCATTTTGCGCTGGAACAGGCGGTTCCATGCTTATT 1119
Query 1562 ATTGGTTCTGCTGCTGGTGTAGCCTTCATGGGGATGGAGAAAGTCGATTTCTTTTGGTAC 1621
| ||| ||||||||||| ||| ||||||| | |||||||||||| ||||||||||||||
Sbjct 1120 ACTGGGTCTGCTGCTGGAGTAATCTTCATGAGTATGGAGAAAGTCAATTTCTTTTGGTAC 1179
Query 1622 TT-CAGAAAGGTTAGTGGTTTTGCTTTTGCTGGTTATGCTGCTGGTATC--GCAGCTTAT 1678
|| | | ||||| || |||||||||||||| |||| | ||||||||||| | | ||||
Sbjct 1180 TTTC-GTAAGGTGAGCGGTTTTGCTTTTGCGGGTTTTACTGCTGGTATCATG-A-CTTAC 1236
Query 1679 CTGGCGGTTCATAATCTTC 1697
|| |||||||| || ||||
Sbjct 1237 CTCGCGGTTCACAA-CTTC 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87650151570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5