BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929843

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G19508.1 | Symbols:  | unknown protein; LOCATED IN: mitochon...   427    2e-119


> AT3G19508.1 | Symbols:  | unknown protein; LOCATED IN: mitochondrion; 
Has 34 Blast hits to 34 proteins in 14 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; 
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6762127-6762720 
REVERSE LENGTH=521
Length=521

 Score =  427 bits (231),  Expect = 2e-119
 Identities = 270/289 (93%), Gaps = 2/289 (1%)
 Strand=Plus/Plus

Query  1    GTGTTGCAGAAGGTAGAGGAAAATGAAGAAAGTGCTGAGAGTTTACGGCGGCGTGT-TGA  59
            ||||||||||||||| | |||||||||||| ||||||||||| ||||||||||| | |||
Sbjct  3    GTGTTGCAGAAGGTAAACGAAAATGAAGAAGGTGCTGAGAGTATACGGCGGCGT-TATGA  61

Query  60   GGCTAGTGAGGCTTTTACCGGCAGACACAAGGCCGTATTACGCTAAGTACGCCAGGGAGA  119
            |||| ||||| ||||| ||||| ||  |||||||||||||||| ||||||||||||||||
Sbjct  62   GGCTGGTGAGACTTTTGCCGGCGGATTCAAGGCCGTATTACGCCAAGTACGCCAGGGAGA  121

Query  120  ATTTCGTTAACTACCGTGAAGTCGACCAAAGCGAAACATCCCTCGACGAACTCTTTCAAC  179
            |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct  122  ATTTCGTTAATTACCGTGAAGTCGATCAAAGCGAAACATCCCTCGACGAACTCTTCCAGC  181

Query  180  GAGCCTATAATCACTCACTTTGGGTACTCAAGAAGTACTCAATTGACGAATCAGCAGCGA  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  182  GAGCCTATAATCACTCACTTTGGGTACTCAAGAAGTACTCAATTGACGAATCAGCAGCGA  241

Query  240  CGAAGTTGAAAGAGATTTGTTTTGAATAATAATGCACACCAAATGTTCG  288
            |||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct  242  CGAAGTTGAAAGAGATTTGTTTTGAATAATAACGCACACCAAGTGTTCG  290



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13270685736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5