BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929847
Length=1507
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19540.1 | Symbols: | Protein of unknown function (DUF620) ... 2433 0.0
AT1G61080.1 | Symbols: | Hydroxyproline-rich glycoprotein fami... 56.5 7e-07
> AT3G19540.1 | Symbols: | Protein of unknown function (DUF620)
| chr3:6780619-6783166 FORWARD LENGTH=2134
Length=2134
Score = 2433 bits (1317), Expect = 0.0
Identities = 1449/1512 (96%), Gaps = 12/1512 (1%)
Strand=Plus/Plus
Query 1 TGAAGC-AAAACAGA-GTTTTTG-AAATGGAGAAAAAACAAGGCTTTTTCTCTGCTCTCA 57
|||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 118 TGAAGCAAAAACAGAGGTTTTTGAAAATGGAGAAAAAACAAGGCTTTTTCTCTGCTCTCA 177
Query 58 GAGACGAAGTTGTGAGAGGTCTTTCGCCGTCACGATCCAGAGCAAGGTCTCGTTCCGTTA 117
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GACACGAAGTTGTGAGAGGTCTTTCGCCGTCACGATCCAGAGCAAGGTCTCGTTCCGTTA 237
Query 118 GTCCCGCTCGTTCTAATTCACCCATGTCAGCTCTCACTTGGGGGAGAAAGAACTTAACCG 177
|||||||| | |||| ||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 238 GTCCCGCTAGGTCTAGTTCACCCATGTCAGCTCTCACTTGGGGAAGAAAGAACTTAA-C- 295
Query 178 GAGGAGCTGGAGGAGGCGGTGGTGGTGGCGGAGGATACTATTTGGCGCAACCGGAGCAGA 237
||| ||||| || ||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 296 -TGGA---GGAGGCGGTGGTGGTGGTGGCGGAGGTTACTATTTAGCGCAACCAGAGCAGT 351
Query 238 TAATCGGGAGATCCGGGAGTTTGAGACCTGTAATGGAAGGTCCTGATCCAGATGAAGGAG 297
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 TAATTGGGAGATCCGGAAGTTTGAGACCTGTAATGGAAGGTCCTGATCCAGATGAAGGAG 411
Query 298 GAGGAGGTGGTACTATAGGAGAATCTAAACGACTCGGGTCGGGTTTAGGTCACTGGGTTA 357
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 GAGGAGGTGGTAATATAGGAGAATCTAAACGACTCGGGTCGGGTTTAGGTCACTGGGTTA 471
Query 358 AAGGACAGCTGTCTCGTGCTCCGTCTGTTGCTGCCACGGCGGCTTACCGGAGAAATGATC 417
|||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 472 AAGGGCAGCTGTCTCGTGCTCCGTCTGTTGCTGCGACGGCGGCTTATCGGAGAAATGATC 531
Query 418 TGAGACTTCTTCTTGGAGTAATGGGAGCTCCTCTTGCTCCTATTCATGTCTCTTCCTCTG 477
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 TGAGACTTCTTCTTGGTGTAATGGGAGCTCCTCTTGCTCCTATTCATGTCTCTTCCTCTG 591
Query 478 ATCCTTTGCCTCATCTTAGTATCAAAAACACTCCAATCGAAACATCATCTGCTCAATATA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 592 ATCCTTTGCCTCATCTTAGTATCAAAAACACTCCAATCGAAACATCATCTGCTCAGTATA 651
Query 538 TTCTTCAACAGTTCACTGCAGCTTCCGGTGGTCAGAAGCTACAAAACTCCATTAAAAACG 597
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 652 TTCTTCAACAGTACACTGCAGCTTCTGGTGGTCAGAAGCTACAAAACTCCATTAAAAACG 711
Query 598 CTTATGCGATGGGGAAGCTCAAGATGATTACTTCTGAGCTTGAAACCGCTACAAGAACTG 657
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 712 CTTATGCGATGGGGAAGCTCAAGATGATTACTTCAGAGCTTGAAACTGCTACAAGAACCG 771
Query 658 TTAGGAATCGAAACCCATCTAAGGCTGAGACTGGAGGTTTTGTTCTTTGGCAGATGAATC 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TTAGGAATCGAAACCCATCTAAGGCTGAGACTGGAGGTTTTGTTCTTTGGCAGATGAATC 831
Query 718 CAGACATGTGGTACGTTGAGCTTGCTGTTGGTGGTAGTAAGGTTCGTGCTGGCTGTAACG 777
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 832 CAGACATGTGGTATGTTGAGCTTGCTGTTGGGGGTAGTAAGGTTCGTGCTGGCTGCAATG 891
Query 778 GCAAGCTTGTATGGAGACACACTCCTTGGCTCGGATCTCATACTGCTAAAGGGCCTGTCA 837
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 892 GCAAGCTTGTATGGAGACACACTCCTTGGCTCGGATCTCATACTGCTAAAGGACCTGTCA 951
Query 838 GGCCTCTCCGCCGTGGACTTCAGGGACTAGATCCGAGAACAACTGCTGCAATGTTTGCGG 897
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 GACCTCTCCGCCGTGGACTTCAGGGACTAGATCCGAGAACAACTGCTGCAATGTTTGCGG 1011
Query 898 AAGCGAAGTGTATAGGAGAGAAGAAGGTGAATGGTGAAGATTGCTTCATTTTGAAGCTAT 957
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1012 AAGCGAAGTGTATAGGAGAGAAGAAGGTGAATGGTGAAGATTGCTTCATTTTGAAGTTAT 1071
Query 958 GCACTGACCCTGAAACACTAAAGGCGAGGAGCGAAGGACCGGCTGAGATCATAAGGCATG 1017
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1072 GCACTGACCCTGAAACACTAAAAGCGAGGAGCGAAGGACCGGCTGAGATCATTAGGCATG 1131
Query 1018 TCCTCTTTGGCTACTTCAGTCAGAAAACAGGACTCTTGGTTCACATTGAGGATTCACATT 1077
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1132 TCCTCTTTGGCTACTTCAGTCAGAAAACAGGGCTCTTGGTTCACATTGAGGATTCACATT 1191
Query 1078 TGACCCGGATCCAATCCAACGGTGGAGAGACTGTTTTCTGGGAGACCACATACAACTCGT 1137
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 TGACCCGGATTCAATCTAACGGTGGAGAGACTGTTTTCTGGGAGACCACATACAACTCGT 1251
Query 1138 CCCTAGACGATTACCGTCAGGTCGAAGGGATCATGATTGCTCACTCAGGACATTCAGTTG 1197
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1252 CCCTAGACGATTACCGTCAGGTCGAAGGAATCATGATTGCTCACTCGGGACATTCAGTTG 1311
Query 1198 TGACGCTTTTCAGATTTGGGGAAGTGGCGATGAGCCACACGAGGACAAAGATGGAAGAAA 1257
|||| || |||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1312 TGACACTATTCAGATTTGGGGAAGTGGCGACGAGCCATACGAGGACAAAGATGGAAGAAA 1371
Query 1258 GCTGGACGATTGAGGAAGTTGCGTTTAACGTTCCCGGTCTATCTCTCGATTGCTTTATAC 1317
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1372 GCTGGACGATTGAGGAAGTTGCGTTTAACGTTCCTGGTCTGTCTCTCGATTGCTTTATAC 1431
Query 1318 CACCAGCTGATCTAAAGTCCAGTTCTTTAACCGATTCCTGCGAGTACCCACAAGAGGAAA 1377
||||||||||||| ||| || ||||||||||||| |||||||||||||||||||||||||
Sbjct 1432 CACCAGCTGATCTTAAGACCGGTTCTTTAACCGAATCCTGCGAGTACCCACAAGAGGAAA 1491
Query 1378 GAGGGAAGAACAACACACTCGCATTGTCTGCAGCTCACAGGGCCAAAGTTGCAGCCTTGG 1437
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 GAGGCAAGAACAACACACTCGCATTGTCTGCAGCTCACAGGGCCAAAGTTGCAGCCTTGG 1551
Query 1438 AGAACGGGAGCTTTGAAGATCACCGCCCGGTTTGGCATAGC-GATGTCTAACGCTTAAA- 1495
||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1552 AGAACGGGAGCTTGGAAGATCACCGCCCGGTTTGGCATA-CTGATGTCTAACGCTTAAAG 1610
Query 1496 AGAGAGCTTATG 1507
||||||||||||
Sbjct 1611 AGAGAGCTTATG 1622
> AT1G61080.1 | Symbols: | Hydroxyproline-rich glycoprotein family
protein | chr1:22493194-22497019 REVERSE LENGTH=2724
Length=2724
Score = 56.5 bits (30), Expect = 7e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Minus
Query 183 GCTGGAGGAGGCGGTGGTGGTGGCGGAGGA 212
||||||||||||||||||||||||||||||
Sbjct 1394 GCTGGAGGAGGCGGTGGTGGTGGCGGAGGA 1365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74347007145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5