BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929852

Length=1123
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G20705.1 | Symbols:  | pseudogene, hypothetical protein | ch...   102    7e-21
  AT1G65990.1 | Symbols:  | type 2 peroxiredoxin-related / thiol ...  82.4    9e-15
  AT4G33290.1 | Symbols:  | F-box and associated interaction doma...  63.9    3e-09
  AT3G20710.1 | Symbols:  | F-box family protein | chr3:7237911-7...  60.2    4e-08


> AT3G20705.1 | Symbols:  | pseudogene, hypothetical protein | 
chr3:7235948-7237084 REVERSE LENGTH=1137
Length=1137

 Score =  102 bits (55),  Expect = 7e-21
 Identities = 164/213 (77%), Gaps = 21/213 (10%)
 Strand=Plus/Plus

Query  677  TTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCAT-CCTCTGCCATTTCACTCTTGTC  735
            |||||||||||||||||||||||||||||||| || | ||| |||| || || |    | 
Sbjct  669  TTTTGATTTTACAAGAGAGAGATTTGGACCGCGTC-TGCCTTTGCCCTT-CA-TGAA-T-  723

Query  736  TTG-ATGATTCTGTAATTCTATCTACTCTTCGA-GAAGAGAAGCTTGCTG-TGTTATTTA  792
            ||| |||||  |||  | ||||||  |  || | |||||||||||||| | ||||||| |
Sbjct  724  TTGGATGATG-TGTC-T-CTATCTG-TGGTCAAAGAAGAGAAGCTTGC-GATGTTATTAA  778

Query  793  AGAGGTGTGATGCATGTGATATGAAAATATGGATTACA-ACTAAGATTGATGCCA-ATAC  850
            || |||| ||| |||||||  || | || ||| | ||  || |||||||| |||  ||  
Sbjct  779  AGCGGTGGGATACATGTGAGGTGGAGATTTGGGTGACGGAC-AAGATTGA-GCCCGAT--  834

Query  851  AGTGTCATGGAGCAACTTCTTAAAAGTTGATAT  883
             ||||| |||||||| ||||||||||||| |||
Sbjct  835  -GTGTCGTGGAGCAAGTTCTTAAAAGTTGGTAT  866


> AT1G65990.1 | Symbols:  | type 2 peroxiredoxin-related / thiol 
specific antioxidant / mal allergen family protein | chr1:24571603-24573471 
REVERSE LENGTH=1662
Length=1662

 Score = 82.4 bits (44),  Expect = 9e-15
 Identities = 49/51 (96%), Gaps = 2/51 (4%)
 Strand=Plus/Plus

Query  676   GTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTC-ATCCTCTGCCATTT  725
             |||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct  1172  GTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTA-CCTCTGCCATTT  1221


> AT4G33290.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr4:16049573-16050865 FORWARD LENGTH=1293
Length=1293

 Score = 63.9 bits (34),  Expect = 3e-09
 Identities = 41/44 (93%), Gaps = 2/44 (5%)
 Strand=Plus/Plus

Query  676  GTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCAT-CCTCT  718
            |||||||||||||||||||||||||||| ||||||| | |||||
Sbjct  692  GTTTTGATTTTACAAGAGAGAGATTTGGTCCGCTTC-TGCCTCT  734


> AT3G20710.1 | Symbols:  | F-box family protein | chr3:7237911-7238999 
REVERSE LENGTH=1089
Length=1089

 Score = 60.2 bits (32),  Expect = 4e-08
 Identities = 45/51 (88%), Gaps = 2/51 (4%)
 Strand=Plus/Plus

Query  676  GTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCAT-CCTCTGCCATTT  725
            ||||||||||||||||||||||||||||| | | || | |||||||| |||
Sbjct  659  GTTTTGATTTTACAAGAGAGAGATTTGGAACACCTC-TGCCTCTGCCCTTT  708



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 55069997865


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5