BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929853
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20690.1 | Symbols: | F-box and associated interaction doma... 106 4e-22
AT1G65990.1 | Symbols: | type 2 peroxiredoxin-related / thiol ... 82.4 7e-15
AT4G33290.1 | Symbols: | F-box and associated interaction doma... 75.0 1e-12
AT3G20705.1 | Symbols: | pseudogene, hypothetical protein | ch... 65.8 7e-10
AT4G09143.1 | Symbols: | pseudogene, type 2 peroxiredoxin -rel... 63.9 3e-09
AT3G20710.1 | Symbols: | F-box family protein | chr3:7237911-7... 62.1 1e-08
> AT3G20690.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7231570-7232682 REVERSE LENGTH=1113
Length=1113
Score = 106 bits (57), Expect = 4e-22
Identities = 96/114 (84%), Gaps = 6/114 (5%)
Strand=Plus/Plus
Query 26 GATGATGTCCGATCTTCCACATGATTTGTTAGAGGAGATAT-TATCTAGGGTTCCATTGA 84
|||||||||||||||||||||||||||| | |||||||| | | |||||| |||| ||||
Sbjct 3 GATGATGTCCGATCTTCCACATGATTTGGTGGAGGAGAT-TCTCTCTAGGCTTCCGTTGA 61
Query 85 CATGCCTTAGG-GCAGTGCGATCTACTTGCAAAACATGGAACAATT-TATCCAA 136
|| | ||| ||| ||||||||||||||||||| |||||| || |||||||
Sbjct 62 TAT-CTTTAAAAGCAATGCGATCTACTTGCAAAACCTGGAACG-TTCTATCCAA 113
> AT1G65990.1 | Symbols: | type 2 peroxiredoxin-related / thiol
specific antioxidant / mal allergen family protein | chr1:24571603-24573471
REVERSE LENGTH=1662
Length=1662
Score = 82.4 bits (44), Expect = 7e-15
Identities = 50/53 (94%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 535 TCTGTTTTGATTTTACAAGAGAGAGATTTGGACCGCATCTTCCTCTTCCATTT 587
|||||||||||||||||||||||||||||||||||| ||| ||||| ||||||
Sbjct 1169 TCTGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTACCTCTGCCATTT 1221
> AT4G33290.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:16049573-16050865 FORWARD LENGTH=1293
Length=1293
Score = 75.0 bits (40), Expect = 1e-12
Identities = 154/206 (75%), Gaps = 19/206 (9%)
Strand=Plus/Plus
Query 535 TCTGTTTTGATTTTACAAGAGAGAGATTTGGACCGCATCTTCCTCTTCCATTTTAC-T-A 592
||||||||||||||||||||||||||||||| |||| ||| ||||| || || || | |
Sbjct 689 TCTGTTTTGATTTTACAAGAGAGAGATTTGGTCCGCTTCTGCCTCTACCGGTTAACGTTA 748
Query 593 T-GATGTTTCACATGATTTTGTGGGTCTC-TCTTCTGTTAGAGAAGAGCA-ACTTGCGG- 648
| ||| | | |||| | |||| | || |||| ||||||||||| | | | ||||||
Sbjct 749 TAGATAATGAATATGAATATGTGACT-TCATCTTGTGTTAGAGAAGGGAAGA-TTGCGGC 806
Query 649 TGTTATTTGA--ATATT--TTAATA-C-ATCTGAGATAGAGATATGGACGACAAC-AGAG 701
| |||||| | | | || ||| | || |||| | |||||||||| || || | ||
Sbjct 807 T-TTATTTCAGCACAACGATTCATATCCATATGAGCTTGAGATATGGATTACGACTA-AG 864
Query 702 ATTGAGCCC-AATGTGGTGTCGTGGA 726
|||||| | || ||||||||||||
Sbjct 865 ATTGAGGCGGAAA-TGGTGTCGTGGA 889
> AT3G20705.1 | Symbols: | pseudogene, hypothetical protein |
chr3:7235948-7237084 REVERSE LENGTH=1137
Length=1137
Score = 65.8 bits (35), Expect = 7e-10
Identities = 159/214 (74%), Gaps = 28/214 (13%)
Strand=Plus/Plus
Query 539 TTTTGATTTTACAAGAGAGAGATTTGGACCGCATCTTCCTCTT-CCATTTTACTATGATG 597
|||||||||||||||||||||||||||||||| ||| ||| || || || | ||||
Sbjct 669 TTTTGATTTTACAAGAGAGAGATTTGGACCGCGTCTGCCT-TTGCCCTT---C-ATGAA- 722
Query 598 TTTCACATGATTTTGTGGGTCTCTCTTCTGT--T-AGAGAAGAGCAA-CTTGCGGTGTTA 653
||| ||||| ||| ||||| | |||| | | ||||||| || |||||| |||||
Sbjct 723 TTTGG-ATGAT---GTG--TCTCTAT-CTGTGGTCAAAGAAGAG-AAGCTTGCGATGTTA 774
Query 654 TTTGAATATTTTA-ATACATCTGAGATAGAGATATGGACGACA-ACAGAGATTGAGCCCA 711
|| || | |||||| |||| | ||||| ||| ||| ||| |||||||||||
Sbjct 775 TTA-AAGCGGTGGGATACATGTGAGGTGGAGATTTGGGTGACGGACA-AGATTGAGCCCG 832
Query 712 ATGTGGTGTCGTGGAT-ACCCTTCTTAAAAGTTG 744
||||| | |||||| | |||||||||||||
Sbjct 833 ATGTG-T--CGTGGAGCAAG-TTCTTAAAAGTTG 862
> AT4G09143.1 | Symbols: | pseudogene, type 2 peroxiredoxin -related,
similar to type 2 peroxiredoxin, putative | chr4:5821214-5822443
FORWARD LENGTH=1230
Length=1230
Score = 63.9 bits (34), Expect = 3e-09
Identities = 42/46 (91%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 535 TCTGTTTTGATTTTACAAGAGAGAGATTTGGACCGCATCTTCCTCT 580
|||||||||||||||||||||||||||| || |||| ||| |||||
Sbjct 695 TCTGTTTTGATTTTACAAGAGAGAGATTCGGGCCGCTTCTCCCTCT 740
> AT3G20710.1 | Symbols: | F-box family protein | chr3:7237911-7238999
REVERSE LENGTH=1089
Length=1089
Score = 62.1 bits (33), Expect = 1e-08
Identities = 45/51 (88%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 537 TGTTTTGATTTTACAAGAGAGAGATTTGGACCGCATCTTCCTCTTCCATTT 587
|||||||||||||||||||||||||||||| | | ||| ||||| || |||
Sbjct 658 TGTTTTGATTTTACAAGAGAGAGATTTGGAACACCTCTGCCTCTGCCCTTT 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45713073770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5