BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929856
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19590.1 | Symbols: BUB3.1 | Transducin/WD40 repeat-like sup... 1759 0.0
AT1G49910.1 | Symbols: BUB3.2 | Transducin/WD40 repeat-like sup... 1112 0.0
> AT3G19590.1 | Symbols: BUB3.1 | Transducin/WD40 repeat-like superfamily
protein | chr3:6805631-6808593 FORWARD LENGTH=1409
Length=1409
Score = 1759 bits (952), Expect = 0.0
Identities = 1031/1069 (96%), Gaps = 5/1069 (0%)
Strand=Plus/Plus
Query 1 TTTGTGATCTTCAACGGGAAAAATGACTAC---GACTCCGTCCGCCGGTCGTGAGCTCTC 57
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 146 TTTGTGATCTTCAACGGGAAAAATGACGACTGTGACTCCGTCCGCCGGTCGTGAGCTCTC 205
Query 58 GAATCCGCCGTCCGACGGCTTTTCCAATCTCCGATTTTCCAATAACAGTGATCATCTCCT 117
||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||
Sbjct 206 GAATCCGCCGTCCGACGGCATTTCTAATCTCCGATTTTCTAATAACAGTGATCATCTCCT 265
Query 118 CGTTTCTTCATGGGATAAGCGTGTGAGATTGTATGATGTGAGCACCAATTCGTTGAAAGG 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 CGTTTCTTCATGGGATAAGCGTGTGAGATTGTATGATGTGAGCACCAATTCGTTGAAAGG 325
Query 178 GGAGTTCTTACATGGCGGAGCAGTGCTCGATTGCTGTTTTCACGATGATTTCTCCGGCTT 237
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 326 AGAGTTCTTACATGGCGGAGCAGTACTCGATTGCTGTTTTCACGATGACTTCTCCGGCTT 385
Query 238 CAGTGTTGGCGCCGATTACAAAGTCAGAAGGATTGTATTCAATGTCGGCAAAGAGGACAT 297
|||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 386 CAGTGTTGGCGCTGATTACAAAGTCCGACGGATTGTATTCAATGTCGGCAAAGAGGACAT 445
Query 298 TTTGGGGACACATGACAAACCAGTGCGATGTGTTGAGTATTCTTATGCTGCAGGG-CAAG 356
||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 446 TTTGGGGACACATGACAAAGCAGTGCGATGTGTTGAGTATTCTTACGCTGC-GGGACAAG 504
Query 357 TGATCACTGGATCTTGGGATAAAACAGTTAAATGTTGGGATCCAAGAGGCGCAAGTGGGC 416
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 505 TGATCACTGGATCTTGGGATAAAACAGTTAAATGTTGGGATCCAAGAGGCGCTAGTGGGC 564
Query 417 CTGAACGCACCCAGGTGGGAACATATTTGCAGCCAGAGCGTGTTTACTCTATGTCTCTTG 476
||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 565 CTGAACGCACCCAAGTGGGAACATATTTGCAACCAGAACGTGTTTACTCTATGTCTCTTG 624
Query 477 TTGGACATCGTTTGGTAGTGGCAACAGCAGGAAGGCATGTAAACATCTATGATCTCAGAA 536
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 625 TTGGACATCGTTTGGTAGTGGCTACAGCAGGAAGGCATGTAAACATCTATGATCTCAGAA 684
Query 537 ATATGTCTCAGCCTGAGCAAAGAAGAGAGTCTTCACTGAAATACCAGACGAGATGTGTGC 596
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 685 ATATGTCTCAGCCTGAGCAAAGAAGGGAGTCTTCACTGAAATACCAGACGAGATGTGTGC 744
Query 597 GTTGTTATCCTAATGGAACAGGATATGCTCTTAGCTCTGTTGAAGGAAGGGTTGCTATGG 656
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 745 GTTGTTATCCTAATGGAACAGGCTATGCTCTTAGCTCTGTTGAAGGAAGGGTTGCAATGG 804
Query 657 AGTTTTTTGATCTGTCAGAAGCTGCTCAAGCTAAAAAATATGCTTTCAAATGTCATCGGA 716
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 805 AGTTTTTTGATCTGTCAGAGGCTGCTCAAGCTAAAAAATATGCTTTCAAATGTCATCGGA 864
Query 717 AATCAGAGGCTGGAAGGGACATTGTTTACCCTGTAAATTCCATTGCCTTCCATCCAATCT 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 AATCAGAGGCTGGAAGGGACATTGTTTACCCTGTAAATTCCATTGCCTTCCATCCAATCT 924
Query 777 ATGGCACCTTTGCAACTGGAGGTTGTGATGGTTTCGTCAACATTTGGGATGGTAACAACA 836
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 925 ATGGCACCTTTGCAACTGGAGGCTGTGATGGTTTCGTCAACATTTGGGATGGTAACAACA 984
Query 837 AGAAGAGGTTATATCAGTATTCAAAGTATCCAACAAGTATCTCGGCACTGTCGTTCAGTC 896
|||||||| |||||||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 985 AGAAGAGGCTATATCAGTACTCAAAGTATCCAACGAGTATCTCGGCACTGTCATTCAGTC 1044
Query 897 GAGATGGTCAGCTACTGGCTGTTGCTTCAAGTTACACGTTTGAAGAGGGGGAGAAATCGC 956
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1045 GAGATGGTCAGCTGCTGGCTGTTGCTTCAAGTTACACATTTGAAGAGGGAGAGAAATCGC 1104
Query 957 AAGAACCAGAGGCCATCTTTGTAAGAAGCGTGAACGAAATCGAAGTGAAACCAAAACCCA 1016
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1105 AAGAACCGGAGGCCATCTTTGTAAGAAGCGTGAATGAAATCGAAGTGAAACCAAAACCGA 1164
Query 1017 AAGTATACCCGAATCCTGCGGCCTAGAAAGGAAGAAACACAAGTTATTT 1065
|||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1165 AAGTATACCCGAATCCTGCGGCGTAGAAAGGAAGAAACACAAGTTATTT 1213
> AT1G49910.1 | Symbols: BUB3.2 | Transducin/WD40 repeat-like superfamily
protein | chr1:18479025-18481475 FORWARD LENGTH=1224
Length=1224
Score = 1112 bits (602), Expect = 0.0
Identities = 869/998 (87%), Gaps = 18/998 (2%)
Strand=Plus/Plus
Query 44 GGTCGTGAGCTCTCGAATCCGCCGTCCGACGGCTTTTCCAATCTCCGATTTTCCAATAAC 103
||||| |||||||||||||| |||||||| || |||| ||||| |||||||| ||||||
Sbjct 22 GGTCGCGAGCTCTCGAATCCACCGTCCGATGGGATTTCTAATCTTCGATTTTCTAATAAC 81
Query 104 AGTGATCATCTCCTCGTTTCTTCATGGGATAAGCGTGTGAGATTGTATGATGTGAGCACC 163
|| |||||| | || || ||||||||||||||| |||| ||||||||||||| || | |
Sbjct 82 AGCGATCATTTACTAGTCTCTTCATGGGATAAGAGTGTAAGATTGTATGATGCGAACGGC 141
Query 164 AATTCGTTGAAAGGGGAGTTCT-TACATGGCGGAGCAGTGCTCGATTGCTGTTTTCACGA 222
||| | ||| ||||||||| | |||||| ||||| || ||||||||||| || || ||
Sbjct 142 GATTTGATGAGAGGGGAGTT-TAAACATGGTGGAGCGGTACTCGATTGCTGCTTCCATGA 200
Query 223 TGATTTC-TCCGGCTTCAGTGTTGGCGCCGATTAC-AAAGTCAGAAGGATTGTA-TTCAA 279
||| ||| || || ||||||||| ||||||| ||| ||||| ||||| |||| | |||||
Sbjct 201 TGA-TTCTTCTGGATTCAGTGTTTGCGCCGA-TACTAAAGTTAGAAGAATTG-ACTTCAA 257
Query 280 TGTC-GGCAAAGAGGACATTTTGGGGACACATGACAAACCAGTGCGATGTGTTGAGTATT 338
|| | |||||||| ||| ||||||| || ||||| || ||||| ||||||||||||||||
Sbjct 258 TG-CTGGCAAAGAAGACGTTTTGGGTACGCATGAGAAGCCAGTTCGATGTGTTGAGTATT 316
Query 339 CTTATGCTGCAGGGCAAGTGATCACTGGATCTTGGGATAAAAC-AGTTAAATGTTGGGAT 397
||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||
Sbjct 317 CTTATGCTGCAGGGCAAGTGATCACTGGAAGTTGGGATAAAACGA-TTAAATGTTGGGAT 375
Query 398 CCAAGAGGCGCAAGTGGGCCTGAACGCACCCAGGTGGGAACATATTTGCAGCCAGAGCGT 457
|||||||| ||||||||| |||| ||||| ||| | ||||| ||| |||| || ||||||
Sbjct 376 CCAAGAGGTGCAAGTGGGACTGAGCGCACACAGATTGGAACTTATATGCAACCTGAGCGT 435
Query 458 GTTTACTCTATGTCTCTTGTTGGACATCGTTTGGTAGTGGCAACAGCAGGAAGGCATGTA 517
||| ||||| | |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 436 GTTAACTCTCTTTCTCTTGTTGGAAATCGTTTGGTAGTGGCAACAGCAGGAAGGCATGTC 495
Query 518 AACATCTATGATCTCAGAAATATGTCTCAGCCTGAGCAAAGAAGAGAGTCTTCACTGAAA 577
||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 496 AACATTTATGATCTTAGAAATATGTCCCAGCCTGAGCAAAGAAGAGAGTCCTCACTTAAA 555
Query 578 TACCAGACGAGATGTGTGCGTTGTTATCCTAATGGAACAGGATATGCTCTTAGCTCTGTT 637
|||||||| |||||||| ||||||||||| || |||||||||||||| ||||||||||||
Sbjct 556 TACCAGACAAGATGTGTACGTTGTTATCCCAACGGAACAGGATATGCCCTTAGCTCTGTT 615
Query 638 GAAGGAAGGGTTGCTATGGAGTTTTTTGATCTGTCAGAAGCTGCTCAAGCTAAAAAATAT 697
||||| |||||| | ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 616 GAAGGGAGGGTTTCAATGGAGTTTTTTGATCTATCAGAAGCTGCTCAGGCTAAAAAATAT 675
Query 698 GCTTTCAAATGTCATCGGAAATCAGAGGCTGGAAGGGACATTGTTTACCCTGTAAATTCC 757
|||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||| |
Sbjct 676 GCTTTCAAATGTCACCGGAAATCAGAGGATGGAAGGGACATTGTCTACCCTGTAAATGCA 735
Query 758 ATTGCCTTCCATCCAATCTATGGCACCTTTGCAACTGGAGGTTGTGATGGTTTCGTCAAC 817
||||| |||||||| || |||||||| ||||| | ||||| ||||||||||| ||||||
Sbjct 736 ATTGCTTTCCATCCGATTTATGGCACTTTTGCTTCCGGAGGCTGTGATGGTTTTGTCAAC 795
Query 818 ATTTGGGATGGTAACAACAAGAAGAGG-TTATATCAGTATTCAAAGTATCCAACAAGTAT 876
|||||||| |||||||| ||||||||| || |||||||| || |||||||||||||||||
Sbjct 796 ATTTGGGACGGTAACAATAAGAAGAGGCTT-TATCAGTACTCTAAGTATCCAACAAGTAT 854
Query 877 CT-CGGCACTGTCGTTCAGTCGAGATGGTCAGCT-ACTGGCTGTTGCTTCAAGTTACACG 934
| |||| ||||| ||||| ||||||||| | | ||||||||||||||| |||||||||
Sbjct 855 -TGCGGCGCTGTCATTCAGCCGAGATGGTG-GATTACTGGCTGTTGCTTCTAGTTACACG 912
Query 935 TTTGAAGAGGGGGAGAAATCGCAAGAACCAGAGGCCATCTTTGTAAGAAGCGTGAACGAA 994
||||||||||| || ||| |||| ||||| || ||||||||||| ||||| || || |||
Sbjct 913 TTTGAAGAGGGAGACAAACCGCATGAACCGGACGCCATCTTTGTTAGAAGTGTTAATGAA 972
Query 995 ATCGAAGTGAAACCAAAACCCAAAGTATACCCGAATCC 1032
|| ||||||||||| ||||||||||||||||| |||||
Sbjct 973 ATTGAAGTGAAACCGAAACCCAAAGTATACCCAAATCC 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52158366255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5