BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929866

Length=541
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G19663.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   130    1e-29


> AT3G19663.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:6826768-6826911 
FORWARD LENGTH=144
Length=144

 Score =  130 bits (70),  Expect = 1e-29
 Identities = 129/155 (83%), Gaps = 14/155 (9%)
 Strand=Plus/Minus

Query  176  TTATGTACCAAATGTTGAAGCAAGGAGAGTAGATCCAAGTGTCGTAAGCGATG-AAACAT  234
            ||||||| ||||   | ||||||||||||||| ||||||||| ||||| |||| ||| ||
Sbjct  144  TTATGTA-CAAA--ATAAAGCAAGGAGAGTAGGTCCAAGTGTTGTAAGTGATGCAAA-AT  89

Query  235  CTCTA-CCTTCTCCATCGTTTTTC-AGAGCAAATATTGGAACGAAAAGATTGGTACCAAG  292
            ||| | || ||| ||||  ||||| |||||| |||| |||||||||||||||||||||||
Sbjct  88   CTCCATCC-TCTTCATC-ATTTTCAAGAGCAGATATCGGAACGAAAAGATTGGTACCAAG  31

Query  293  CGGTCCGAACAATGCAACATCTCCACCTTCTCCAT  327
            |||||||     ||||||||||||  |||||||||
Sbjct  30   CGGTCCG-----TGCAACATCTCCGGCTTCTCCAT  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25920819852


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5