BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929867
Length=2928
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19670.1 | Symbols: ATPRP40B, PRP40B | pre-mRNA-processing p... 2795 0.0
> AT3G19670.1 | Symbols: ATPRP40B, PRP40B | pre-mRNA-processing
protein 40B | chr3:6828062-6836582 REVERSE LENGTH=3159
Length=3159
Score = 2795 bits (1513), Expect = 0.0
Identities = 1687/1772 (95%), Gaps = 8/1772 (0%)
Strand=Plus/Plus
Query 1158 TCAAGGTAGTGGGACTGGGCCAGAAGAAAGCCAAAAACCTATGGTGGAAAGTG-AAAGAG 1216
|||||||||||||| ||| ||| |||||||||||||||||||||| ||||||| |||| |
Sbjct 1233 TCAAGGTAGTGGGAGTGGACCAAAAGAAAGCCAAAAACCTATGGTTGAAAGTGAAAAG-G 1291
Query 1217 TTGAGAGCCAAACGGAAGAAAAACAAATTAATCAAGAGAATTTTTCCTTTAACAATAAAT 1276
||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1292 TTGAGAGCCAAACAGAAGAAAAACAAATTCATCAAGAGAGTTTTTCCTTTAACAATAAAT 1351
Query 1277 CGGAAGCTGGGGATGTCTTCAAATCACTTTTGAAATCTGCCAATGTTGGATCTGACTGGA 1336
|||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1352 TGGAAGCTGTGGATGTCTTCAAATCACTTTTGAAATCCGCCAAAGTTGGATCTGACTGGA 1411
Query 1337 CATGGGAACAGGCCATGAGAGAAATTATTAATGACAGAAGATACGGTGCTCTGAGGACAC 1396
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1412 CATGGGAACAGGCCATGAGAGAAATTATTAATGACAAAAGATACGGTGCTCTGAGGACAC 1471
Query 1397 TTGGAGAGCGGAAGCAAGCCTTCAATGAGTTCTTACTTCAAACGAAAAGAGCAGCTGAGG 1456
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1472 TTGGAGAGCGGAAGCAAGCCTTCAATGAGTTCTTACTCCAAACGAAACGAGCAGCTGAGG 1531
Query 1457 AGGAAAGGCTAGCCAGACAGAGAAAACGGTATGAAGATTTTAAAAGGATGTTAGAGGAAT 1516
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1532 AGGAAAGGCTAGCCAGACAGAAAAAACTGTATGAAGATTTTAAAAGGATGTTAGAGGAAT 1591
Query 1517 GCGTGGAACTTACTCCTTCTACTCGGTGGAGTAAGGCTGTGACAATGTTTGAAGCCGATG 1576
||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1592 GCGTGGAGCTTACTCCTTCTACTCGGTGGAGTAAGACTGTGACAATGTTTGAAGACGATG 1651
Query 1577 AGCGTTTCAAAGCTCTTGAACGAGAAAAAGACCGTCGTAATATTTTTGAAGATCATGTCA 1636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1652 AGCGTTTCAAAGCTCTTGAACGAGAAAAAGACCGTCGTAATATTTTTGAAGATCATGTCA 1711
Query 1637 GTGAGCTAAAAGAGAAGGAGCGGGTGAAAGCTCTTGAGGATCGCAAGCGGAACATAATTG 1696
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1712 GTGAGCTAAAAGAGAAGGGGCGGGTGAAAGCTCTTGAGGATCGCAAGCGGAACATAATTG 1771
Query 1697 AATACCGAAGATTTTTGGAATCTTGCAATTTCATCAAGCCTAATAGTCAATGGCGCAAAG 1756
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1772 AATACAAAAGATTTTTGGAATCTTGCAATTTCATCAAGCCAAATAGTCAATGGCGCAAAG 1831
Query 1757 TTCAGGACCGCTTAGAAGTGGATGAAAGATGTTCACGTCTTGAGAAAATTGATCAGCTAG 1816
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1832 TTCAGGACCGCTTAGAAGTGGATGAAAGATGTTCGCGTCTCGAGAAAATTGATCAGCTAG 1891
Query 1817 AAATCTTTCAGGAGTATCTGCGTGATCTggagagagaagaagaggagaaaaagaagatac 1876
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1892 AAATCTTTCAGGAGTATCTGCGTGATCTGGAAAGAGAAGAAGAGGAGAAAAAGAAGATAC 1951
Query 1877 aaaaggaggaactcaaaaaagcagagcgaaagCATCGTGATGAGTTCCGTGGGCTGATAG 1936
| ||||||||||||||||||| |||||||||||| ||||||||||||| ||||||| |||
Sbjct 1952 AGAAGGAGGAACTCAAAAAAGTAGAGCGAAAGCACCGTGATGAGTTCCATGGGCTGTTAG 2011
Query 1937 AGGAACATATTGCAACAGGAGAGCTTACTGCCAAAACTGTATGGCGTGATTATTTAATGA 1996
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2012 ATGAACATATTGCAACAGGAGAGCTTACTGCCAAAACTATATGGCGTGATTATTTAATGA 2071
Query 1997 AGGTCAAAGATTTACCAGTATATTCAGCAATTGCGTCGAACTCCTCTGGAGCTACTCCAA 2056
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2072 AGGTCAAGGATTTACCAGTATATTCAGCAATTGCGTCAAACTCCTCTGGAGCTACTCCAA 2131
Query 2057 AAGACTTATTTGAAGATGCTGTTGAGGATTTGaaaaaaaGGTACCACGAGCTCAAGTCTC 2116
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2132 AAGACTTATTTGAAGATGCTGTTGAGGATTTGAAAAAAAGGGACCACGAGCTCAAGTCTC 2191
Query 2117 AGATAAAGGATGTATTGAAATTGAGAAAGGTAAATTTATCCGCTGGATCAGCATTTGATG 2176
|||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||
Sbjct 2192 AGATAAAGGATGTATTGAAATTGAGAAAAGTAAATTTATCCGCTGGGTCAACATTTGATG 2251
Query 2177 AGTTCAAGGTCTCAATTTCCGAGGATATTGGTTTTCCACCTATTCCTGACGTTAGACTAA 2236
|||||||||| || ||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 2252 AGTTCAAGGTTTCTATTTCCGAGGATATTGGTTTTCCTCTTATTCCTGACGTTAGACTAA 2311
Query 2237 AGGTAGTCTTTGATGATTTGCTGGAAAGGGCAAAGGAGAAGGAAGAAAAGGAAGCCAGAA 2296
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2312 AGTTAGTCTTTGATGATTTGCTGGAAAGGGCAAAGGAGAAGGAAGAAAAAGAAGCCAGAA 2371
Query 2297 AACAGACACGGCAGACTGAAAAGTTGGTGGATATGCTTCGCTCCTTCAAGGATATAACTG 2356
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2372 AACAGACACGGCAGACTGAAAAGTTGGTTGATATGCTTCGCTCCTTCAAGGATATAACTG 2431
Query 2357 CCTCTTCATCATGGGAGGAATCAAAACATCTTGTTGAAGGTAGTGAAAAATGCTGTACTA 2416
|||||||||| |||||||||| ||| ||||||||||| ||||||||||||||| ||||||
Sbjct 2432 CCTCTTCATCCTGGGAGGAATTAAAGCATCTTGTTGAGGGTAGTGAAAAATGCAGTACTA 2491
Query 2417 TTGGCGATGAGAGCTTCCGGAAGCAGAC--ATTCGAAGATTACGTTTCACTCCTCAAAGA 2474
|||| ||||||||||| ||||||| | | ||||||||||||||||||||||| |||||
Sbjct 2492 TTGGTGATGAGAGCTTTCGGAAGC-G-CTGTTTCGAAGATTACGTTTCACTCCTTAAAGA 2549
Query 2475 GCAATCAAAAAGGATCAAACAGAACAAGAAGGTACCCGAGGATGTGAGAGAGGAACATGA 2534
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2550 GCAATCAAATAGGATCAAACAGAACAAGAAGGTACCCGAGGATGTGAGAGAGGAACATGA 2609
Query 2535 CAAGGGGAGAGATAAATACGGAAGAGAGAAGGACAGAGTGCGAGAAAGAGACAGTGATGA 2594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2610 CAAGGGGAGAGATAAATACGGAAGAGAGAAGGACAGAGTGCGAGAAAGAGACAGTGACGA 2669
Query 2595 TCATCATAAGAAAGGTGCAGCTGGTAATTACAACCATGATATGAATGATTCCCATGGAAA 2654
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 2670 TCATCATAAGAAAGGTGCAGCTGGTAAATACAACCATGATATGAATGAACCCCATGGAAA 2729
Query 2655 AGAACGTAGAAGATCAGGAAGAGATAGCCATAACCGACATCGAGAAAGACATACTAGTGT 2714
||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 2730 AGAACGTAGGAGATCAGGAAGAGATAGCCATAACAGACATAGAGAAAGACATACTAGTGT 2789
Query 2715 GAAGGAAAATGACATAGACCATTTCAAAGAATCCCAAAAAGCTGGTGGTGGTCACAAGAA 2774
|||||||||||||| ||||||||||||||||||||| |||||||| ||||| || |||||
Sbjct 2790 GAAGGAAAATGACACAGACCATTTCAAAGAATCCCATAAAGCTGGCGGTGGGCATAAGAA 2849
Query 2775 ATCAAGACATCAGCGAGGTTTGGTCCCCGAAGCAGAGGTTGAGGGCA-GGATAAAGCGGC 2833
|||||||||||||||||| | |||| ||||||||||||||||||||| ||| ||||||||
Sbjct 2850 ATCAAGACATCAGCGAGGCTGGGTCTCCGAAGCAGAGGTTGAGGGCAAGGA-AAAGCGGC 2908
Query 2834 GTAGAAAAGAGGAAGAGAGTGAGCACACAAAGGAAGAGGAGCTTGAAGATGGAGAATGTG 2893
|||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2909 GTAGAAAAGAAGAAGCGAGGGAGCACACAAAGGAAGAGGAGCTTGAAGATGGAGAATGTG 2968
Query 2894 GTAGGTATTGAAAATCGTTACACCAGGTTAAT 2925
|| ||||||||||||| ||||||| |||||||
Sbjct 2969 GTCGGTATTGAAAATCTTTACACCCGGTTAAT 3000
Score = 1851 bits (1002), Expect = 0.0
Identities = 1094/1139 (96%), Gaps = 4/1139 (0%)
Strand=Plus/Plus
Query 22 ATGGCTAATAACCATCAGTATCCTGGCATTCAGCCATTCCAGCATCCTAATGCTAGCTCC 81
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTAATAACCATCAATATCCTGGCATTCAGCCATTCCAGCATCCTAATGCTAGCTCC 60
Query 82 ATAGATTTACCCCGAGGCTTTGCTCCACCCATGAACTTTCAGTTTCATCCTACCATTCAA 141
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 ATAGATTTACCCCGAGGCTTTGCTCCACCCATGAACTTTCAGTTTCTTCCTACCATTCAA 120
Query 142 GCTCCTCAGTCTGAGCAAGTTGCTCGATTGTCTTCTCAGAACTTTCAATGTGTTGGCAGA 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTCCTCAGTCTGAGCAAGTTGCTCGATTGTCTTCTCAGAACTTTCAATGTGTTGGCAGA 180
Query 202 GGTGGCACAGTATTGAACATTGGATATCCACCTCAATCTTATGCACCTCAGTTATTACAG 261
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGTGGCACAGTATTGAGCATTGGATATCCACCTCAATCTTATGCACCTCAGTTATTACAA 240
Query 262 TCAATGCACCATTCACATGAAAGACCCAGCCAATTAAATCAGGTGCAAGTGCAACATGTG 321
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCATGCACCATTCACATGAAAGACCCAGCCAATTAAATCAGGTGCAAGTGCAACATGTG 300
Query 322 CCACTTGGACCCCCAACTCTAGTTTCACAGCCAAATGTGTCAATTGCTTCTGGTACCTCC 381
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCACTTGGACCCCCAACTCTAATTTCACAGCCAAATGTGTCAATTGCTTCTGGTACCTCC 360
Query 382 TTGCATCAGCCTTATGTACAAACTCCAGATATTAGTATGCCTGGCTTTGGTGGCCCTAGG 441
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 TTGCATCAGCCTTATGTACAAACTCCAGATATTGGTATGCCTGGCTTTGGTGGCCCTAGG 420
Query 442 GCACTCTTTTCTTATCCGAGTGCCACATCTTACGAAGGTTCGAGGGCACCACCTCAAGTC 501
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 GCACTCTTTTCTTATCCGAGTGCCACATCTTACGAAGGTTCGAGGGTGCCACCTCAAGTC 480
Query 502 ACTGGACCAAGCAGTCATAGTCAGGCACAACATAGAGCATCTATCAGCCAGACTACTGCA 561
||||||||||||| |||||||||||||||||| ||||||||||||| || ||| |||||
Sbjct 481 ACTGGACCAAGCATTCATAGTCAGGCACAACAGAGAGCATCTATCATTCATACTTCTGCA 540
Query 562 CAATCTTCTATCCTGAATCCGACATTTGAACAACCAAAGGAAGCTTTTACT-AAACCTAT 620
||||||||||| ||||||||||||||||||||||||||| ||||||| | |||||| |
Sbjct 541 GAATCTTCTATCATGAATCCGACATTTGAACAACCAAAGGCAGCTTTT-TTAAAACCTTT 599
Query 621 ACCTTCTCAAGAGGCTCTAACAGATTGGGTTGAGCATACCTCTGCAGATGGAAGGAAATA 680
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 ACCTTCTCAAAAGGCTCTAACAGATTGGGTTGAGCATACCTCTGCGGATGGAAGGAAATA 659
Query 681 TTTTTTCAACAAGAGAACAAAGAAGTCCACTTGGGAGAAGCCTGTTGAGTTGATGACTCT 740
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTTTTTCAACAAGAGGACAAAGAAGTCCACTTGGGAGAAGCCTGTTGAGTTGATGACTCT 719
Query 741 TTTTGAGAGAGCAGATGCAAGAACTGACTGGAAAGAACATTCAAGTCCTGATGGAAGAAA 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTTTGAGAGAGCAGATGCAAGAACTGACTGGAAAGAACATTCAAGTCCTGATGGAAGAAA 779
Query 801 GTATTACTACAATAAGATTACGAAGCAATCAACATGGACAATGCCTGAAGAAATGAAGAT 860
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 780 GTATTACTACAATAAGATTACGAAGCAATCAACATGGACAATGCCGGAAGAGATGAAGAT 839
Query 861 TGCGCGTGAACAAGCAGAAAAAGCATCTGTTCAAGGGCCTCATGCAGAAGGCATTATTAA 920
|| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
Sbjct 840 TGTGCGTGAACAAGCAGAAATAGCATCTGTTCAAGGGCCTCATGCGGAAGGCATTATTGA 899
Query 921 TGTTTCTAAGGTGCTGACTCGTTCTGATACTGCATCAACTGCAGCTCCGACTAGTCTACC 980
|| |||| ||||||||||||||||||| |||||||| ||||||||||||||| |||||||
Sbjct 900 TGCTTCTGAGGTGCTGACTCGTTCTGACACTGCATCGACTGCAGCTCCGACTGGTCTACC 959
Query 981 AAGCCAAACTTCAACCTCTGATGTCAGT-GAGAAACTAGCTCTTACTTCTGATTGGAAGC 1039
||||||||||||||||||||| | | || ||||||||| ||||||||||||||| |||||
Sbjct 960 AAGCCAAACTTCAACCTCTGAGGGC-GTTGAGAAACTAACTCTTACTTCTGATTTGAAGC 1018
Query 1040 AGCCAGCTTCAGTTCCTGGAAGTTCTTCTCCGGTCGAAAATGTTGATCGAGTTCAGATGA 1099
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1019 AGCCAGCTTCAGTTCCTGGAAGTTCTTCACCGGTCGAAAATGTTGATCGAGTTCAGATGA 1078
Query 1100 TTGCAGATGAAACATCACAATTGTGTGATACTTCAGAAACCGATGGTCCTTCTGTCCCT 1158
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1079 GTGCAGATGAAACATCACAATTGTGTGATACTTCAGAAACCGATGGTCTTTCTGTCCCT 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 145534301643
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5