BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929869
Length=874
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36590.1 | Symbols: | MADS-box transcription factor family ... 150 2e-35
> AT4G36590.1 | Symbols: | MADS-box transcription factor family
protein | chr4:17260937-17262227 REVERSE LENGTH=994
Length=994
Score = 150 bits (81), Expect = 2e-35
Identities = 172/213 (81%), Gaps = 18/213 (8%)
Strand=Plus/Plus
Query 21 aaaatggtgaggaa-aagcaaaggtcgacaaaaaatcgagatcg-tgaaaataaaaaatg 78
|||||||||| ||| | ||||||||| || ||||| ||||| | ||||| |||| |
Sbjct 36 AAAATGGTGA-GAAGTACCAAAGGTCGTCAGAAAATAGAGAT-GAAAAAAATGGAAAACG 93
Query 79 aaaatAACCTTCAGGTTACTTTTTCAAAGAGAAGA-TCTGGCCTTTTCAAAAAAGCTAGT 137
||| ||||||||||||||||| ||||| |||||| || || ||||||||||||||||||
Sbjct 94 AAAGCAACCTTCAGGTTACTTTCTCAAAAAGAAGATTC-GGTCTTTTCAAAAAAGCTAGT 152
Query 138 GAACTTTGCACACTTT-GTGGTGCAGA-AGTCGCTATT-ATTGTATTCTCACCTGGTCA- 193
|||||||||||| || |||||||||| | || | || ||||| ||||| ||||||
Sbjct 153 GAACTTTGCACA-TTAAGTGGTGCAGAGATTC--TGTTGATTGTGTTCTCTCCTGGTGGG 209
Query 194 AAAG-GTTTATTCTTTTGGTCATCCGAA-TGTT 224
|||| |||| | ||||||| ||||| || ||||
Sbjct 210 AAAGTGTTT-T-CTTTTGGCCATCC-AAGTGTT 239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42648790803
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5