BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg929869 Length=874 Score E Sequences producing significant alignments: (Bits) Value AT4G36590.1 | Symbols: | MADS-box transcription factor family ... 150 2e-35 > AT4G36590.1 | Symbols: | MADS-box transcription factor family protein | chr4:17260937-17262227 REVERSE LENGTH=994 Length=994 Score = 150 bits (81), Expect = 2e-35 Identities = 172/213 (81%), Gaps = 18/213 (8%) Strand=Plus/Plus Query 21 aaaatggtgaggaa-aagcaaaggtcgacaaaaaatcgagatcg-tgaaaataaaaaatg 78 |||||||||| ||| | ||||||||| || ||||| ||||| | ||||| |||| | Sbjct 36 AAAATGGTGA-GAAGTACCAAAGGTCGTCAGAAAATAGAGAT-GAAAAAAATGGAAAACG 93 Query 79 aaaatAACCTTCAGGTTACTTTTTCAAAGAGAAGA-TCTGGCCTTTTCAAAAAAGCTAGT 137 ||| ||||||||||||||||| ||||| |||||| || || |||||||||||||||||| Sbjct 94 AAAGCAACCTTCAGGTTACTTTCTCAAAAAGAAGATTC-GGTCTTTTCAAAAAAGCTAGT 152 Query 138 GAACTTTGCACACTTT-GTGGTGCAGA-AGTCGCTATT-ATTGTATTCTCACCTGGTCA- 193 |||||||||||| || |||||||||| | || | || ||||| ||||| |||||| Sbjct 153 GAACTTTGCACA-TTAAGTGGTGCAGAGATTC--TGTTGATTGTGTTCTCTCCTGGTGGG 209 Query 194 AAAG-GTTTATTCTTTTGGTCATCCGAA-TGTT 224 |||| |||| | ||||||| ||||| || |||| Sbjct 210 AAAGTGTTT-T-CTTTTGGCCATCC-AAGTGTT 239 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42648790803 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5