BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929871

Length=527
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G19690.1 | Symbols:  | CAP (Cysteine-rich secretory proteins...   821    0.0  


> AT3G19690.1 | Symbols:  | CAP (Cysteine-rich secretory proteins, 
Antigen 5, and Pathogenesis-related 1 protein) superfamily 
protein | chr3:6842220-6842856 REVERSE LENGTH=637
Length=637

 Score =  821 bits (444),  Expect = 0.0
 Identities = 490/512 (96%), Gaps = 4/512 (1%)
 Strand=Plus/Plus

Query  15   AAAACAATGTCTCTACTCAAAACCAACATTTTATTTCTCTTAGCAATTGCTCTTTTGTAT  74
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1    AAAACAATGTCTCTACTCAAAACCAACATTTTATTTCTCTTAGCAATTGCTCTTTTCTAT  60

Query  75   GGCTCTTTAGCCGAAGATTTGCAACAAGAATTCTTAGAGGCCCACAACGAAGCCCGAAAC  134
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  61   GGCTCTTTAGCCGAAGATTTGCAACAACAATTCTTAGAGGCCCACAACGAAGCCCGAAAC  120

Query  135  GAGGTTGGGCTTGACCCATTGGTTTGGGACGATGAGGTCGCTGCTTATGCCGCCAGCTAT  194
            ||||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct  121  GAGGTTGGGCTCGACCCATTGGTTTGGGACGATGAGGTCGCTGCATATGCGGCAAGCTAT  180

Query  195  GCAAACCAGAGGATCAATGATTGTGCATTAGTCCATTCGAACGGACCATTTGGAGAGAAC  254
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  181  GCAAACCAGAGGATCAATGATTGTGCATTAGTCCATTCGAATGGACCATTTGGAGAGAAC  240

Query  255  ATAGCTATGAGTAGTGGAGATATGCCGGCTGAAGATGCTGCAGAAATGTGGATCAACGAG  314
            ||||| |||||||||||||| ||| |||||||||||||||| ||||||||||||||||||
Sbjct  241  ATAGCGATGAGTAGTGGAGAAATGTCGGCTGAAGATGCTGCGGAAATGTGGATCAACGAG  300

Query  315  AAACAGTACTACGATTACAATAGTAACACGTGTAATGATCCAAACGGTGGCACGTGTCTA  374
            |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct  301  AAACAGTACTACGATTACGATAGTAACACGTGTAATGATCCAAACGGTGGCACCTGTCTA  360

Query  375  CATTACACGCAAGTTGTTTGGAAAAACACAGTTAGATTGGGATGTGCTAAAGTTGTGTGT  434
            ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct  361  CATTACACGCAAGTTGTTTGGAAAAACACAGTTCGTTTGGGATGTGCTAAAGTTGTGTGT  420

Query  435  AACAGTGGTGGCACTTTTATTACATGCAACTATGATCCTCCTGGTAATTACATTGGTGAA  494
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  AACAGTGGTGGTACTTTTATTACATGCAACTATGATCCTCCTGGTAATTACATTGGTGAA  480

Query  495  AACCCATACTAATTAAAAATAATTTCATGTCT  526
            || |||| ||||  |||  |||||||||||||
Sbjct  481  AAACCATTCTAA--AAA--TAATTTCATGTCT  508



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25217541794


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5