BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929873
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19710.1 | Symbols: BCAT4 | branched-chain aminotransferase4... 1718 0.0
AT3G19700.1 | Symbols: IKU2 | Leucine-rich repeat protein kinas... 124 1e-27
> AT3G19710.1 | Symbols: BCAT4 | branched-chain aminotransferase4
| chr3:6846969-6849497 REVERSE LENGTH=1366
Length=1366
Score = 1718 bits (930), Expect = 0.0
Identities = 1053/1113 (95%), Gaps = 6/1113 (1%)
Strand=Plus/Plus
Query 1 CTCGACTCAAACAAGCACATCCATGGCTCCTTCTACGCAACCTCTTCCTACAAGTGTTTC 60
|||||||| ||||| ||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 47 CTCGACTCGAACAAACACATCCATGGCTCCTTCTGCGCAACCTCTTCCTGTGAGTGTTTC 106
Query 61 GGATGAAAAGTATGCTAATGTCAAGTGGGACGAGTTGGTATTCGGGTTTGTTCGTACGGA 120
||||||||| ||||| |||||||||||||| ||||||| |||| |||||||||||||||
Sbjct 107 GGATGAAAAATATGCGAATGTCAAGTGGGAAGAGTTGGCATTCAAGTTTGTTCGTACGGA 166
Query 121 TTATATGTATGTTGCGAAGTGCAATCATGGAGAGAGTTTTCAAGAGGGAAAGATTCTTCC 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 167 TTATATGTATGTTGCGAAGTGCAATCATGGAGAGAGTTTTCAAGAGGGGAAGATTCTTCC 226
Query 181 TTTTGCTGATTTGCAACTTAACCCTTGCGCTGCTGTTCTTCAGTATGGCCAGGGTTTATA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 TTTTGCTGATTTGCAACTTAACCCTTGCGCTGCTGTTCTTCAGTATGGCCAGGGTTTATA 286
Query 241 TGAAGGACTGAAGGCTTACAGGACAGAAGATGGTCGGATTCTGCTATTCCGACCAGACCA 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 TGAAGGACTGAAAGCTTACAGGACAGAAGATGGTCGGATTCTGCTATTCCGACCAGACCA 346
Query 301 AAACGGTCTCCGCATTCAAGCCGGCGCCGACAGACTCTATATGCCTTATCCTTCGGTCGA 360
||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 347 AAACGGTCTCCGCCTTCAAGCCGGAGCTGACAGACTCTATATGCCTTATCCTTCGGTCGA 406
Query 361 TCAATTTGTCTCCGCCATCAAACAAGTGGCTCTTGCCAACAAGAAATGGATTCCTCCTCC 420
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 407 TCAATTCGTCTCCGCCATCAAACAAGTTGCTCTTGCCAACAAGAAATGGATTCCTCCTCC 466
Query 421 GGGGAAAGGAACATTGTATATCAGGCCTATCTTGTTTGGAAGTGGTCCGATTCTTGGTTC 480
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 467 GGGGAAAGGAACATTGTATATTAGGCCTATCTTGTTTGGGAGTGGTCCGATTCTTGGTTC 526
Query 481 ATTTCCTATTCCTGAGACCACCTTCACAGCGTTTGCTTGTCCTGTTGGACGTTATCATAA 540
|||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 527 ATTTCCCATTCCTGAGACCACCTTCACAGCTTTTGCCTGTCCTGTTGGACGTTATCATAA 586
Query 541 GGATAACTCTGGTTTGAATCTGAAAATCGAGGATAAGTTTCGTCGAGCTTTTCCTAGTGG 600
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 587 GGATAACTCTGGTTTGAATCTGAAAATCGAAGATCAGTTTCGTCGAGCTTTTCCTAGTGG 646
Query 601 AACTGGTGGTGTAAAGAGCATCACAAATTATTCTCCTGTTTGGATACCATTGGCAGAGGC 660
|||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 647 AACTGGTGGTGTGAAGAGCATCACAAACTATTGTCCTGTTTGGATACCATTGGCAGAGGC 706
Query 661 GAAAAAACAAGGTTTCTCTGATATTTTGTTTTTGGATGCTGCAACTGGCAAAAACGTGGA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 707 GAAAAAACAAGGTTTCTCTGATATTTTGTTTTTGGATGCTGCAACTGGCAAAAACATTGA 766
Query 721 AGAACTTTTCGCAGCTAACATTTTCATGCTCAAGGGAAATGTTGTATCGACTCCAACAAT 780
|||||||||||||||||| |||| ||||||||||| |||||||||||||| ||||||||
Sbjct 767 AGAACTTTTCGCAGCTAATGTTTTTATGCTCAAGGGCAATGTTGTATCGACACCAACAAT 826
Query 781 TGCAGGAACTATTTTGCCCGGAGTCACACGAAACTGCGTAATGGAATTATGTCGTGATTT 840
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 827 TGCAGGAACTATTTTGCCCGGAGTCACTCGAAACTGCGTAATGGAATTGTGTCGTGATTT 886
Query 841 CGGCTACCAGGTCGAGGAACGTGTGATTCCTCTAGAGGACTTTCTCGATTCGGACGAAAC 900
|||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||| |
Sbjct 887 CGGCTACCAGGTCGAGGAACGTACGATTCCTCTAGTGGACTTTCTCGATGCGGACGAAGC 946
Query 901 TTTCTGTACTGGGACTGCTTCAATTGTGACTAGTATTGCATCCGTAACCTTCAAAGACAA 960
|||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 947 TTTCTGTACTGGCACTGCTTCCATTGTGACTAGTATTGCATCCGTAACCTTTAAAGACAA 1006
Query 961 AAAGACTGCATTCAAAACAGGAGAAGAGACATTGGCTGCGAAGCTATACGAGACGTTAAA 1020
|||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1007 AAAGACCGGATTCAAAACAGGGGAAGAAACATTGGCTGCGAAGCTATACGAGACGTTAAG 1066
Query 1021 TGATATCCAGACGGGTCGGGTCGAGGATACCAAGGGATGGACGGTGGAGATTGACCGTTA 1080
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 TGATATCCAGACGGGTCGGGTCGAGGATACCAAGGGATGGACGGTGGAGATTGACCG--- 1123
Query 1081 CCACCAGGGTTGAATCTTGAAACTGTAACTTGA 1113
||| ||| |||| |||||||||||||||||
Sbjct 1124 CCA---GGGCTGAAAGTTGAAACTGTAACTTGA 1153
> AT3G19700.1 | Symbols: IKU2 | Leucine-rich repeat protein kinase
family protein | chr3:6843662-6847275 FORWARD LENGTH=3460
Length=3460
Score = 124 bits (67), Expect = 1e-27
Identities = 90/100 (90%), Gaps = 6/100 (6%)
Strand=Plus/Minus
Query 1014 CGTTAAATGATATCCAGACGGGTCGGGTCGAGGATACCAAGGGATGGACGGTGGAGATTG 1073
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3460 CGTTAAGTGATATCCAGACGGGTCGGGTCGAGGATACCAAGGGATGGACGGTGGAGATTG 3401
Query 1074 ACCGTTACCACCAGGGTTGAATCTTGAAACTGTAACTTGA 1113
|||| ||| ||| |||| |||||||||||||||||
Sbjct 3400 ACCG---CCA---GGGCTGAAAGTTGAAACTGTAACTTGA 3367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54567992415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5