BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929879

Length=532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G19790.1 | Symbols:  | unknown protein; Has 32 Blast hits to...   449    1e-125


> AT3G19790.1 | Symbols:  | unknown protein; Has 32 Blast hits 
to 26 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa 
- 13; Fungi - 2; Plants - 14; Viruses - 0; Other Eukaryotes 
- 3 (source: NCBI BLink). | chr3:6874748-6875856 REVERSE 
LENGTH=772
Length=772

 Score =  449 bits (243),  Expect = 1e-125
 Identities = 434/520 (83%), Gaps = 38/520 (7%)
 Strand=Plus/Plus

Query  18   AATATGGATAATTCGAAAGTGGAAGTTGACAATGATAATGCAAGCGGATCCAAAGGATCA  77
            ||||||| || |||  ||| ||||| |||||||||| ||||||||||||| |||||||||
Sbjct  77   AATATGGTTATTTCTCAAGAGGAAGCTGACAATGATCATGCAAGCGGATCGAAAGGATCA  136

Query  78   AGCGTTGGGGAAAACAGTTTGGATTCTGA-AGAGTATGATGA-TATGTCTGATGAT-TCA  134
            ||||||||||||||||||||||||||| | ||||| ||| ||  |||  ||||||| |  
Sbjct  137  AGCGTTGGGGAAAACAGTTTGGATTCT-ATAGAGTCTGAAGAGCATG-ATGATGATAT-G  193

Query  135  ACAGAGGAGGAGTCTGAT--GAA-AATTCTGCGAGCGATGGAA-AAATCCTTATGGATTA  190
             | || |  ||| | |||  ||| ||   | | |||||| ||| ||| |||| |||||| 
Sbjct  194  TCTGATG-CGAG-CGGATCGGAAGAA---T-CAAGCGAT-GAAGAAAACCTTGTGGATTC  246

Query  191  TCTTATGTCTGAAATGATTACTGA----TATG-T---ATG-ATGAT--TTT-ACAGAC-G  237
            ||| |||||||||||||||| |||    |||| |   ||| |||||  ||| |||||| |
Sbjct  247  TCTAATGTCTGAAATGATTAATGAGTGGTATGATGAGATGTATGATGATTTAACAGACGG  306

Query  238  ACCT-GTTCGATATTCTTGCAGCTAGCATCCCTTCACTTAGCGCACTACAAACCTGCAAT  296
            | || | | ||||||||||| ||||| ||||||||||||||||| |||| |||| |||||
Sbjct  307  A-CTCGAT-GATATTCTTGCTGCTAGAATCCCTTCACTTAGCGCTCTACGAACCAGCAAT  364

Query  297  AAGCAGCCCTCAGA-T--GACAAGACTAGTACGGTGTTTGATACAATGAAGGTC-CTCAA  352
            ||||| |||||||| |   ||||||||||||  ||||||||| ||||||||| | ||| |
Sbjct  365  AAGCAACCCTCAGATTCCAACAAGACTAGTATTGTGTTTGATTCAATGAAGG-CACTCCA  423

Query  353  TAATCTAACTGGTGTGAGGATGTGGTCGCCTTTATACCTTGCATCGTTGACTCATATTCA  412
            | ||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||||
Sbjct  424  TGATCTACCTGGTGTTAGGATGTGGTCGCCTTTATACCGTGCATCGTTGACTCATTTTCA  483

Query  413  AGCTGATGTAACTCACAGAGAGGCATTCTTAGCATTTTCTGATCCCGAGGATAAGATTTG  472
             |||||||| ||||| |||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct  484  GGCTGATGTTACTCATAGAGAGGCCTTCTTGGCATTTTCTGATCCTGAGGATAAGATTTG  543

Query  473  CTACTTAGAGCACAAGACTGGCAAAAAGAGAGATGAATGA  512
            |||||||||| |||||||||||||||||||||||||||||
Sbjct  544  CTACTTAGAGAACAAGACTGGCAAAAAGAGAGATGAATGA  583



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25468712529


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5