BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg929882 Length=627 Score E Sequences producing significant alignments: (Bits) Value AT3G20475.1 | Symbols: ATMSH5, MSH5 | MUTS-homologue 5 | chr3:7... 532 1e-150 > AT3G20475.1 | Symbols: ATMSH5, MSH5 | MUTS-homologue 5 | chr3:7143454-7151014 FORWARD LENGTH=2719 Length=2719 Score = 532 bits (288), Expect = 1e-150 Identities = 319/334 (96%), Gaps = 2/334 (1%) Strand=Plus/Plus Query 33 AAGATATTTGAAGTTGGAGTTTCAGAAAGTCTCGGAGAGCATATGAGACGCTTCAACTTG 92 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1020 AAGATATTTGAAGTTGGAGTTTCAGAAAGTCTCAGAGAGCATATGAGACGCTTCAACTTG 1079 Query 93 GACATTATTGAAAAGGCCGGCTTATGTATCAGCACAGAGCTAGACTATGTATATGAACTG 152 ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1080 GACATTATTGAGAAGGCCGGCTTATGTATCAGCACAGAGCTAGATTATGTCTATGAACTG 1139 Query 153 GTCATTGGAGTCATTGATGTAACTAGAAGCAAAGAGAGGGGATATCAAACATTGGTGAAA 212 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| Sbjct 1140 GTCATTGGAGTCATTGATGTTACTAGAAGCAAAGAGAGGGGATATCAAACTTTGGTTAAA 1199 Query 213 GAAGGGTTCTGTGCTGAGTTGGATGAGCTGAGGCAAATATACGAGGAGTTGCCAGAGTTT 272 ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| Sbjct 1200 GAAGGATTCTGTGCTGAGTTGGATGAGCTCAGGCAAATATATGAGGAGTTGCCAGAATTT 1259 Query 273 CTGCAGGAGGTTTCAGCGAAGGAGTTAGAACACTTTCCTCATTCGCATAAGGAAAAGCTT 332 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 1260 CTGCAGGAGGTTTCAGCGATGGAGTTAGAACACTTTCCTCATTTGCATAAGGAAAAGCTT 1319 Query 333 CCTCCTTGTATCGTCTATATATTCAACAAATTGG 366 |||||||||||||||||||| | ||||||||||| Sbjct 1320 CCTCCTTGTATCGTCTATAT-T-CAACAAATTGG 1351 Score = 217 bits (117), Expect = 1e-55 Identities = 194/227 (85%), Gaps = 21/227 (9%) Strand=Plus/Plus Query 365 GGTGGCTTTACTTGTTTTCCTATCCCATATTGGAAGCTTTGTACCAGCAGATGCAACAAC 424 |||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1835 GGTGGCGTTAATTGTTTTCCTATCCCATATTGGAAGCTTTGTACCAGCAGATGCAGCAAC 1894 Query 425 TATTGGTTTAACT-----GA---------C-------AGCAAGTTCATGACTGCGGAGCA 463 | ||||||||||| || | |||||||||||||| |||||||| Sbjct 1895 TGTTGGTTTAACTGACAGGATCTTTTGTGCAATGGGAAGCAAGTTCATGACCGCGGAGCA 1954 Query 464 ATCTACATTTATGAAAGATCTGCATCAGGGAGGAATGATGCTCAGGCAGGCAACTTCAAG 523 ||||||||| |||| |||||||||||| | |||||||||||||||||||||||||||||| Sbjct 1955 ATCTACATTCATGATAGATCTGCATCAAGTAGGAATGATGCTCAGGCAGGCAACTTCAAG 2014 Query 524 ATCTGTGTGTCTATTAGACGAGTTTGGTAAAGGCACTCTAACAGAAG 570 |||| ||||||| |||||||||||||||||||||||||| ||||||| Sbjct 2015 ATCTCTGTGTCTCTTAGACGAGTTTGGTAAAGGCACTCTTACAGAAG 2061 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30240956494 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5