BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929882

Length=627
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G20475.1 | Symbols: ATMSH5, MSH5 | MUTS-homologue 5 | chr3:7...   532    1e-150


> AT3G20475.1 | Symbols: ATMSH5, MSH5 | MUTS-homologue 5 | chr3:7143454-7151014 
FORWARD LENGTH=2719
Length=2719

 Score =  532 bits (288),  Expect = 1e-150
 Identities = 319/334 (96%), Gaps = 2/334 (1%)
 Strand=Plus/Plus

Query  33    AAGATATTTGAAGTTGGAGTTTCAGAAAGTCTCGGAGAGCATATGAGACGCTTCAACTTG  92
             ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1020  AAGATATTTGAAGTTGGAGTTTCAGAAAGTCTCAGAGAGCATATGAGACGCTTCAACTTG  1079

Query  93    GACATTATTGAAAAGGCCGGCTTATGTATCAGCACAGAGCTAGACTATGTATATGAACTG  152
             ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct  1080  GACATTATTGAGAAGGCCGGCTTATGTATCAGCACAGAGCTAGATTATGTCTATGAACTG  1139

Query  153   GTCATTGGAGTCATTGATGTAACTAGAAGCAAAGAGAGGGGATATCAAACATTGGTGAAA  212
             |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct  1140  GTCATTGGAGTCATTGATGTTACTAGAAGCAAAGAGAGGGGATATCAAACTTTGGTTAAA  1199

Query  213   GAAGGGTTCTGTGCTGAGTTGGATGAGCTGAGGCAAATATACGAGGAGTTGCCAGAGTTT  272
             ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct  1200  GAAGGATTCTGTGCTGAGTTGGATGAGCTCAGGCAAATATATGAGGAGTTGCCAGAATTT  1259

Query  273   CTGCAGGAGGTTTCAGCGAAGGAGTTAGAACACTTTCCTCATTCGCATAAGGAAAAGCTT  332
             ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct  1260  CTGCAGGAGGTTTCAGCGATGGAGTTAGAACACTTTCCTCATTTGCATAAGGAAAAGCTT  1319

Query  333   CCTCCTTGTATCGTCTATATATTCAACAAATTGG  366
             |||||||||||||||||||| | |||||||||||
Sbjct  1320  CCTCCTTGTATCGTCTATAT-T-CAACAAATTGG  1351


 Score =  217 bits (117),  Expect = 1e-55
 Identities = 194/227 (85%), Gaps = 21/227 (9%)
 Strand=Plus/Plus

Query  365   GGTGGCTTTACTTGTTTTCCTATCCCATATTGGAAGCTTTGTACCAGCAGATGCAACAAC  424
             |||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  1835  GGTGGCGTTAATTGTTTTCCTATCCCATATTGGAAGCTTTGTACCAGCAGATGCAGCAAC  1894

Query  425   TATTGGTTTAACT-----GA---------C-------AGCAAGTTCATGACTGCGGAGCA  463
             | |||||||||||     ||         |       |||||||||||||| ||||||||
Sbjct  1895  TGTTGGTTTAACTGACAGGATCTTTTGTGCAATGGGAAGCAAGTTCATGACCGCGGAGCA  1954

Query  464   ATCTACATTTATGAAAGATCTGCATCAGGGAGGAATGATGCTCAGGCAGGCAACTTCAAG  523
             ||||||||| |||| |||||||||||| | ||||||||||||||||||||||||||||||
Sbjct  1955  ATCTACATTCATGATAGATCTGCATCAAGTAGGAATGATGCTCAGGCAGGCAACTTCAAG  2014

Query  524   ATCTGTGTGTCTATTAGACGAGTTTGGTAAAGGCACTCTAACAGAAG  570
             |||| ||||||| |||||||||||||||||||||||||| |||||||
Sbjct  2015  ATCTCTGTGTCTCTTAGACGAGTTTGGTAAAGGCACTCTTACAGAAG  2061



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30240956494


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5