BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929884

Length=356
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G20475.1 | Symbols: ATMSH5, MSH5 | MUTS-homologue 5 | chr3:7...   135    2e-31


> AT3G20475.1 | Symbols: ATMSH5, MSH5 | MUTS-homologue 5 | chr3:7143454-7151014 
FORWARD LENGTH=2719
Length=2719

 Score =  135 bits (73),  Expect = 2e-31
 Identities = 87/93 (94%), Gaps = 3/93 (3%)
 Strand=Plus/Plus

Query  191   CATTTTATCGTTGGCTGGTGTATCCCATCAGAATAACTACGTAAGGCCTGTCCTGACAAT  250
             |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct  1622  CATTTTATCGTTGGCTTGTGTAGCCCATCAGAATAACTACGTAAGGCCTGTCCTGACAGT  1681

Query  251   AGAATCATTGCTTG-TAATTCGAAAATGGAAGG  282
             |||||||||||||| || ||||||| |||||||
Sbjct  1682  AGAATCATTGCTTGATA-TTCGAAA-TGGAAGG  1712



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16688892668


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5