BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929886
Length=742
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20030.1 | Symbols: | F-box and associated interaction doma... 492 2e-138
AT5G60560.1 | Symbols: | F-box and associated interaction doma... 329 2e-89
AT3G25090.1 | Symbols: | F-box associated ubiquitination effec... 71.3 1e-11
AT3G25225.1 | Symbols: | pseudogene, hypothetical protein | ch... 67.6 2e-10
AT3G23680.1 | Symbols: | F-box associated ubiquitination effec... 63.9 2e-09
AT3G04250.1 | Symbols: | F-box associated ubiquitination effec... 63.9 2e-09
AT3G22770.1 | Symbols: | F-box associated ubiquitination effec... 62.1 7e-09
AT5G41494.1 | Symbols: | pseudogene of F-box family protein | ... 54.7 1e-06
> AT3G20030.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6990254-6991462 FORWARD LENGTH=1209
Length=1209
Score = 492 bits (266), Expect = 2e-138
Identities = 403/466 (86%), Gaps = 21/466 (5%)
Strand=Plus/Plus
Query 84 CAACGAAAAAATAGTATACGAAGATGATGTAGAGTATCCAGTGCCGCCAAACT-ATTTAC 142
||| |||||||||| ||||||||| |||| ||||| ||||| |||| || | | ||||||
Sbjct 639 CAAGGAAAAAATAGAATACGAAGAGGATGGAGAGTTTCCAGAGCCGGCAGA-TAATTTAC 697
Query 143 TCTGTTTTGATTTTACGGCGGAGAGCTTTGGACAGTTTCTTCCTCTGCCGTTTCAGCACC 202
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 698 TCTGTTTTGATTTTACGACGGAGAGCTTTGGACAGTTTCTTCCTCTGCCGTTTCAGCAC- 756
Query 203 ATGATGATTT-CGATGCTGGAGCTCTCGCTTCTCTTGGGGACGAGAAACTCGCCGCGTTA 261
| || ||| ||||| |||||||||| |||||||||| || |||||||| || ||||||
Sbjct 757 -T-ATC-TTTACGATGTTGGAGCTCTCTCTTCTCTTGGAGATGAGAAACTTGCGGCGTTA 813
Query 262 TATCAGAGCGAGGATA--GA---A-CAGAGGTGGA-ACTTTGGGTTACTAGTATGATTGA 314
| |||| ||| ||||| || | |||||||||| | |||||||||| | | ||| |||
Sbjct 814 TTTCAGTGCGGGGATACCGATTTATCAGAGGTGGAGA-TTTGGGTTACAACTTTGACTGA 872
Query 315 GCCCAATGCAGTGTCGTGGTACCCTTTCTTAAAAGTTGACATGGAACCACACTACGGTTC 374
| ||||| ||||||| ||| | ||||||||||||||||| |||||||||||||||||| |
Sbjct 873 GACCAATACAGTGTCATGGAATCCTTTCTTAAAAGTTGATATGGAACCACACTACGGT-C 931
Query 375 -TCA-TTTTATGTTTCACTTTTACGGTGGCAGTTTCTTCATTGACGAGGAGAAGAAAGTC 432
| | |||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 932 GT-AGTTTTATGTTTGACTATTACGGTGGCAGTTTCTTCATTGACGAGGAGAAGAAACTC 990
Query 433 GCCGTGGTTATTCACTTTGACGAATCTG-AAGCGACCCGCCACGAGGACGCAGCTTACAT 491
|| || ||| |||| ||||||||||||| || ||||||| ||||||||||| |||||||
Sbjct 991 GCTGTTGTTTTTCAGTTTGACGAATCTGGAAT-GACCCGCTACGAGGACGCAACTTACAT 1049
Query 492 CATTGGTGATAATGGCTACGTTAAAAAAGTGCATCTTGGAGAAGCT 537
|||||| || |||||||||||||||||||||| |||||||||||||
Sbjct 1050 CATTGGAGAGAATGGCTACGTTAAAAAAGTGCGTCTTGGAGAAGCT 1095
> AT5G60560.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:24345949-24347172 FORWARD LENGTH=1125
Length=1125
Score = 329 bits (178), Expect = 2e-89
Identities = 321/387 (83%), Gaps = 22/387 (6%)
Strand=Plus/Plus
Query 136 TATTTACTCTGTTTTGATTTTACGGCGGAGAGCTTTGGACAGTTTCTTCCTCTGCCGTTT 195
||||||||||||||||||||||| |||||| |||||| ||| ||| |||| | ||||||
Sbjct 670 TATTTACTCTGTTTTGATTTTACAACGGAGAACTTTGGTCAGCTTCATCCTTTACCGTTT 729
Query 196 CAGCACCATGATGATT-TCGATGCTGGAGCTCTCGCTTCTCTTGGGGACGAGAAACTCGC 254
|||| || || ||| ||| |||||||||||| ||||| |||| || |||||||||||
Sbjct 730 GAGCA--AT-AT-ATTGACGACGCTGGAGCTCTCTCTTCTTTTGGAGAGGAGAAACTCGC 785
Query 255 CGCGTTATATCAGAGCGAGGATAGAACAGAGGTGGA-ACTTTGGGTTACTAGTATGATTG 313
||||||| ||||||| | ||| ||| ||||| | |||||||||| ||||||||||
Sbjct 786 GGCGTTATTTCAGAGCTTCGCTAGTTCAGTTGTGGAGA-TTTGGGTTACAAGTATGATTG 844
Query 314 AGCCCAATGCAGTGTCGTGGTA-CCCTTTCTTAAAAGTTGACATGGAACCACACTACGGT 372
|| ||||||||||||||||| | |||||||||||||||||| ||| ||||||||| ||
Sbjct 845 AGGCCAATGCAGTGTCGTGG-ATCCCTTTCTTAAAAGTTGATATGAAACCACACTGTAGT 903
Query 373 TCTCATTTTATGTTT-CACTTTTACGGTGGCAGTTTCTTCATTGACGAGGAGAAGAAAGT 431
| || |||| |||| | |||| |||||||||||||||||||||||||||||||||||||
Sbjct 904 TTTCGTTTT-CGTTTGCCCTTTGACGGTGGCAGTTTCTTCATTGACGAGGAGAAGAAAGT 962
Query 432 CGCCGTGGTTATTCACT-TTGA------CG---AATCTGAAGCGACCCGCCACGAGGACG 481
||||||||||||||| | |||| || |||||||| || |||| |||||||||
Sbjct 963 CGCCGTGGTTATTCA-TGTTGATGTTGTCGCCGAATCTGAAATGAACCGCTACGAGGACG 1021
Query 482 CAGCTTACATCATTGGTGATAATGGCT 508
||||||||||||||| || |||||||
Sbjct 1022 TAGCTTACATCATTGGAGAGAATGGCT 1048
> AT3G25090.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:9140039-9141094 REVERSE LENGTH=978
Length=978
Score = 71.3 bits (38), Expect = 1e-11
Identities = 56/64 (88%), Gaps = 4/64 (6%)
Strand=Plus/Plus
Query 380 TTATGTTTCACTTTTA-CGGTGGCAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCGT- 437
||||| ||| |||||| |||| ||||||||||||||||||||||||||||||||| |
Sbjct 720 TTATG-TTC-CTTTTATAAGTGGAAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCTTT 777
Query 438 GGTT 441
||||
Sbjct 778 GGTT 781
> AT3G25225.1 | Symbols: | pseudogene, hypothetical protein |
chr3:9184970-9186171 FORWARD LENGTH=1202
Length=1202
Score = 67.6 bits (36), Expect = 2e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 403 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCGTGGTT 441
|||||||||||||||||||||||||||||||| ||||||
Sbjct 999 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTT 1037
> AT3G23680.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8526366-8527173 REVERSE LENGTH=708
Length=708
Score = 63.9 bits (34), Expect = 2e-09
Identities = 41/44 (93%), Gaps = 1/44 (2%)
Strand=Plus/Plus
Query 399 TGGCAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCGT-GGTT 441
||| ||||||||||||||||||||||||||||||||| | ||||
Sbjct 426 TGGAAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCATTGGTT 469
> AT3G04250.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:1121950-1122828 FORWARD LENGTH=879
Length=879
Score = 63.9 bits (34), Expect = 2e-09
Identities = 40/43 (93%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 399 TGGCAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCGTGGTT 441
||| |||||||||||||||||||||||||||||| || |||||
Sbjct 537 TGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCTCCATGGTT 579
> AT3G22770.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8047684-8048667 REVERSE LENGTH=984
Length=984
Score = 62.1 bits (33), Expect = 7e-09
Identities = 37/39 (95%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 403 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCGTGGTT 441
|||||||||||||||||||||||||||||||| || |||
Sbjct 799 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTTGTT 837
> AT5G41494.1 | Symbols: | pseudogene of F-box family protein
| chr5:16602589-16603438 FORWARD LENGTH=850
Length=850
Score = 54.7 bits (29), Expect = 1e-06
Identities = 31/32 (97%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 408 CTTCATTGACGAGGAGAAGAAAGTCGCCGTGG 439
|||||||||||||||||||||||||||| |||
Sbjct 570 CTTCATTGACGAGGAGAAGAAAGTCGCCATGG 601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36017883399
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5