BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929889
Length=2548
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19840.1 | Symbols: ATPRP40C, PRP40C | pre-mRNA-processing p... 3847 0.0
> AT3G19840.1 | Symbols: ATPRP40C, PRP40C | pre-mRNA-processing
protein 40C | chr3:6891086-6897356 FORWARD LENGTH=2779
Length=2779
Score = 3847 bits (2083), Expect = 0.0
Identities = 2396/2545 (94%), Gaps = 29/2545 (1%)
Strand=Plus/Plus
Query 20 AATGGAAGGGGATAATACAACGGAGCCGCCGTACACGACGGCGGCATCTTCGGGACAGAG 79
|||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 142 AATGGAAGGGGAGAATACAACGGATCCGCCGTACACAACGGCGGCATCTTCGGGACAGAG 201
Query 80 TATCTTCGTCCGTCCTCCTCTAATTGCTCCAGTATTGGCTACTGCTTCGAATGTCTCTCA 139
|||||||||||||||||||| |||||||||||| ||||||||| |||||||| |||||||
Sbjct 202 TATCTTCGTCCGTCCTCCTCCAATTGCTCCAGTCTTGGCTACTACTTCGAATTTCTCTCA 261
Query 140 GTCGGAGC---A--A-C--C-CTCTATGTCTATTGCTAGTACAGGTTTTGTCTCTCAGTC 190
|||||||| | | | | |||||||||||||||||||||||||||||||||||||||
Sbjct 262 GTCGGAGCTGAAGGAGCTACACTCTATGTCTATTGCTAGTACAGGTTTTGTCTCTCAGTC 321
Query 191 AGTTCCATCTTCTGTTGCTGCACAATGGGGTTCTAATGCAGCAGCCTCCTCAAATGTTAA 250
|||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 322 AGTTCCATATTCTGTTACTGCACAATGGGGTACTAATGCAGCAGCCTCCTCAAATGTTAA 381
Query 251 TCCCATACCTCAAGCTTCGCCCATGCTAGCAAATGCACCTTTTGGTCGACCAGGAACACT 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 TCCCATACCTCAAGCTTCGCCCATGCTAGCAAATGCACCTTTTGGTCGACCAGGAACACT 441
Query 311 CGCCCCTCCTGGACTAATGACATCTCCGCCTGCTTTTCCTGGTTCCAATCCC-TTTTCTA 369
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 442 CGCCCCTCCTGGACTAATGACATCTCCGCCTGCTTTTCCTGGTTCCAA-CCCTTTTTCTA 500
Query 370 CTACTCCAAGACCTGGGATGTCTACAGGTCCTGCTCAAATCAATCCTGGTATTCATCCGC 429
| || |||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 501 CAACGCCAAGACCTGGGATGTCTGCAGGTCCTGCTCAAATGAATCCTGGTATTCATCCGC 560
Query 430 ACATGTATCCTCCATATCATTCACTGCCTACAATGCCTGGAACTCCTCAAGGAATGTGGT 489
||||||||||||||||||| | | | || |||||||||| ||||||||||||||||
Sbjct 561 ACATGTATCCTCCATATCA-T---T--C-AC--TGCCTGGAACGCCTCAAGGAATGTGGT 611
Query 490 TGCAGCCTCCTCCTATGGGTGGTATTCCCAGGGCACCTTTTCTTTCACATCCTACTACTT 549
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 612 TGCAGCCTCCTTCTATGGGTGGTATTCCCAGGGCACCTTTTCTTTCACATCCTACTACCT 671
Query 550 TTCCTGGTTCATATTCATTTCCAGTTCGTGGAATCTCTCCTAACCTACCATATTCTGGTT 609
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 672 TTCCTGGTTCATATCCATTTCCAGTTCGTGGAATCTCCCCTAACCTACCATATTCTGGTT 731
Query 610 CTCAACCGCTTGGTGCCATTCCTATGGGAAGTGTTGGCAATGTTCATGCATTACCAGGTC 669
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 732 CTCATCCGCTTGGTGCCAGTCCTATGGGAAGTGTTGGCAATGTTCATGCATTACCAGGTC 791
Query 670 ATCAGCTTGATATATCTCCCGGGCAAAAGACAGAAGCACTCTCAGGAATCGATAACAGAG 729
||||| ||||||||||||||||| ||||||||||| |||||||||||||||| ||||||
Sbjct 792 GTCAGCCTGATATATCTCCCGGGCGAAAGACAGAAGAACTCTCAGGAATCGATGACAGAG 851
Query 730 CTGGTTCTCAACTAGTTGGAAATCAGTTAGATGCCTGGACTGCACATAAATCAGAAGCAG 789
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 852 CTGGTTCTCAACTAGTAGGAAATCGGTTAGATGCCTGGACTGCACATAAATCAGAAGCAG 911
Query 790 GAGTTGTTTATTATTATAATTCCGTTACAGGGCAATCAACCTACGAAAAGCCTCCTGGTT 849
||||| |||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 912 GAGTTCTTTACTACTATAATTCCGTTACAGGGCAATCGACCTACGAAAAGCCTCCTGGTT 971
Query 850 TTGGAGGGGAGCCTGATAAAGTGCCTGTGCAGCCAATTCCAGTTTCTATGGAGGA-TTTA 908
||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || ||||
Sbjct 972 TTGGAGGGGAGCCTGATAAAGTGCCAGTGCAGCCAATTCCTGTTTCAATGGA-GAGTTTA 1030
Query 909 CCTGGGACGGATTGGGCTCTTGTGTCCACAAATGACGGCAAAAAGTATTACTACAACAAT 968
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1031 CCTGGGACGGATTGGGCTCTTGTGTCCACAAACGACGGCAAAAAGTATTACTATAACAAT 1090
Query 969 AAAACAAAGGTCAGCAGCTGGCAAATTCCTGCAGAAGTGAAAGA-TTCGGGGAAGAAACC 1027
||||||||||||||||||||||| |||||||||||||| ||||| ||| ||||||||||
Sbjct 1091 AAAACAAAGGTCAGCAGCTGGCAGATTCCTGCAGAAGTAAAAGATTTC-GGGAAGAAACT 1149
Query 1028 GGAGGAGAGGGCTATGGAGAGTGTAGCATCTGTGCCAAGTGCTGATTTCACTGAAAAGGG 1087
||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 1150 AGAGGAGAGGGCTATGGAGAGTGTAGCATCAGTGCCTAGTGCTGATTTAACTGAAAAGGG 1209
Query 1088 TTCTGATCTATCAAGTTTGAGCGCACCTGCTATCAGCAATGGTGGCCGGGATGCTGCATC 1147
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1210 TTCTGATCTAACAAGTTTGAGCGCACCTGCTATTAGCAATGGTGGCCGGGATGCTGCATC 1269
Query 1148 TCTAAAAACTACAAATTTTGGTTCGTCGGCACTGGATTTGGTTAAAAAGAAACTACATGA 1207
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1270 TCTAAAAACTACAAATTTTGGTTCGTCCGCGCTGGATTTGGTTAAAAAGAAACTACATGA 1329
Query 1208 TTCTGGAGTGCCCGTCTCATCTACGACAACATCTGAAGCAAATGGTGGTAAAGCAAGTGA 1267
||||||| |||| ||||||||||||| |||||||||||||||| |||||||| ||| |||
Sbjct 1330 TTCTGGAATGCCTGTCTCATCTACGATAACATCTGAAGCAAATAGTGGTAAAACAACTGA 1389
Query 1268 GGTCACACCAAGTGGAGAAAGTGGAAATGGTACGGGTAAGATAAAAGATGCTCCTGGAGC 1327
||||||||| |||||||||||||||||| ||||||||||| | |||||||||||||||||
Sbjct 1390 GGTCACACCCAGTGGAGAAAGTGGAAATAGTACGGGTAAGGTGAAAGATGCTCCTGGAGC 1449
Query 1328 TGGGGAACTTTCTGATTCTTCTTCAGATTCCGAAGATGAAGATAGTGGACCATCAAAGGA 1387
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1450 TGGGGCCCTTTCCGATTCTTCTTCAGATTCGGAAGATGAAGATAGTGGACCATCGAAGGA 1509
Query 1388 AGAGTGTTTTAAACAGTTTAAGGAAATGCTGAAAGAGAGAGGAATAGCACCGTTTTCTAA 1447
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1510 AGAGTGTTCTAAACAGTTTAAGGAAATGCTGAAAGAGAGAGGAATAGCACCGTTTTCTAA 1569
Query 1448 ATGGGAGAAGGAATTGCCAAAAATTATCTTTGACCCTCGCTTTAAGGCAATACCAAGTCA 1507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1570 ATGGGAGAAGGAATTGCCAAAAATTATCTTTGACCCTCGCTTTAAGGCAATACCAAGTCA 1629
Query 1508 TTCTGTTAGAAGATCTTTATTTGAGCAGTATGTAAAGACACGCGCTGAGGAAGAACGTAA 1567
||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1630 TTCTGTTAGAAGATCATTATTTGAGCAGTACGTAAAGACACGAGCTGAGGAAGAACGTAG 1689
Query 1568 GGAAAAGCGTGCTGCTCATAAGGCAGCTATTGAAGGATTCAGGCAGTTGCTGGATGAAGC 1627
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1690 GGAAAAGCGTGCTGCTCATAAGGCAGCTATTGAAGGTTTCAGGCAGTTGCTGGATGATGC 1749
Query 1628 GTCTACGGACATCCATCAACACACTGATTATCGTGCTTTTAAAAAGAAATGGGGGAATGA 1687
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1750 GTCTACGGACATTGATCAACACACTGACTATCGTGCTTTTAAAAAGAAATGGGGGAATGA 1809
Query 1688 TCTCCGGTTCGAAGCACTTGAGCGGAAGGAGCGGGAGGCTTTGCTGAATGAAAGGGTCCT 1747
|||||||||||||||| ||||||| ||||||||||||| ||| ||||||||||| |||||
Sbjct 1810 TCTCCGGTTCGAAGCAATTGAGCGTAAGGAGCGGGAGGGTTTACTGAATGAAAGAGTCCT 1869
Query 1748 TTCTTTGAAACGAACTGCTGAACAAAAGGCGCAAGAAATTCGCGCAGCTGCTGCCTCTGA 1807
|||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1870 TTCTTTGAAACGAAGTGCTGAACAAAAGGCACAAGAAATTCGCGCTGCTGCTGCCTCTGA 1929
Query 1808 TTTCAAGACAATGCTACGCGAAAGAGAAGTATCATTAAATTCACATTGGTCCAAGGTGAA 1867
|||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1930 TTTCAAGACAATGCTACGGGAAAGAGAAATATCAATAAATTCACATTGGTCCAAGGTGAA 1989
Query 1868 GGATAGTCTGAGAAATGAACCAAGATATAGATCTGTTGCACACGAGGACAGGGAGGTTTT 1927
||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 1990 GGATAGTCTGAGAAATGAACCAAGATATAGATCCGTTGCGCACGAGGATAGGGAGGTTTT 2049
Query 1928 TTATTATGAGTACATTGCGGAACTAAAATCTGCACAAAGGGGAGATGATCATGCGATGAA 1987
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 2050 TTATTATGAGTACATTGCGGAACTAAAAGCTGCACAAAGGGGAGATGATCATGAGATGAA 2109
Query 1988 AGCCAGAGACGAAGCGGACAAACTGAGGGAACGGGAGCGTGAGTTGCGGAAACGCAAAGA 2047
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2110 AGCCAGAGACGAAGAGGACAAACTGAGGGAACGGGAGCGTGAGTTGCGGAAACGCAAAGA 2169
Query 2048 AAGAGAAGTGCAAGAGGTGGAAAGAGTACGACAAAAAATTAGAAGGAAAGAGGCAAGCTC 2107
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2170 AAGAGAAGTGCAAGAGGTGGAAAGGGTACGACAAAAAATTAGAAGGAAAGAGGCAAGCTC 2229
Query 2108 CTCTTATCAAGCTTTGTTAGTGGAAAAAATCAGAGACCCTGAGGCATCCTGGACGGAATC 2167
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2230 CTCTTATCAAGCTTTGTTAGTGGAAAAAATCAGAGACCCTGAGGCATCATGGACGGAATC 2289
Query 2168 TAAGCCAAAACTTGAGAGGGATCCTCAAAAACGAGCCTCTAATCCAGACTTGGATCCTGC 2227
|||||||| |||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 2290 TAAGCCAATACTTGAGAGGGATCCTCAAAAACGTGCCTCTAATCCAGACTTAGAACCTGC 2349
Query 2228 TGATAAAGAGAAGCTATTCCGAGACCACATAAAGACATTATATGAGCGATGTGTTCATGA 2287
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 2350 TGATAAAGAGAAGCTATTCCGAGACCACGTAAAGTCATTATATGAGCGATGTGTTCATGA 2409
Query 2288 CTTCAAAGCTCTTCTAGTTGAAGCCTTGTCATCTGAAGCTGCTTCTCAACAAACAGAAGA 2347
||||||||||||||||| |||||| |||||||||||||| ||| ||| ||||||||||||
Sbjct 2410 CTTCAAAGCTCTTCTAGCTGAAGCGTTGTCATCTGAAGCAGCTACTCTACAAACAGAAGA 2469
Query 2348 CGGAAAGACTGTGCTTGATTCTTGGTCAGCAGCTAAACAAGTACTGAAACCCGATATCAG 2407
|||||||||| |||| ||||||||||| | |||||||||||||||||||||||||||||
Sbjct 2470 TGGAAAGACTGCGCTTAATTCTTGGTCAACGGCTAAACAAGTACTGAAACCCGATATCAG 2529
Query 2408 GTACAGCAAGATGCCAAGG-AGAGATAGGGAAGTCTTATGGCGCCGATATGCTGAGGATA 2466
||||||||||||||| ||| | ||||||||||||| ||||||| ||||||| ||||||||
Sbjct 2530 GTACAGCAAGATGCCGAGGCA-AGATAGGGAAGTCGTATGGCGTCGATATGTTGAGGATA 2588
Query 2467 TCTCGAGGAAACAGAAACAAGAAAACTATCAGGAGGAGAAACAAAGAGATTATAAGACCT 2526
| ||||||||||||| ||| |||||||||||||||||||||||| ||||||| |||||||
Sbjct 2589 TATCGAGGAAACAGAGACATGAAAACTATCAGGAGGAGAAACAACGAGATTACAAGACCT 2648
Query 2527 AAAAAT--CCTA-AACCTATAGGCT 2548
||||| ||| |||| |||||||
Sbjct 2649 AAAAAAAACCTTGAACCAATAGGCT 2673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126470863303
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5