BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929890
Length=1676
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19850.1 | Symbols: | Phototropic-responsive NPH3 family pr... 2427 0.0
> AT3G19850.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr3:6898181-6901255 REVERSE LENGTH=1965
Length=1965
Score = 2427 bits (1314), Expect = 0.0
Identities = 1537/1643 (94%), Gaps = 21/1643 (1%)
Strand=Plus/Plus
Query 1 ATGCAAAAGAAGTTGATACAATGTCTCTTCT-CTGTGATCTTCAAATCAATCTCAATAAC 59
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 79 ATGCAAAAGAAGTTGATACAATGTCTCTT-TGCTGTGATCTTCAAATCAATCTCAATAAC 137
Query 60 CAATTCACTTTCTTCGTCAATCAGGATTTGATTTCAGAGTACTCAGGGTTCTTGAGGAAG 119
||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 138 CAATTTACTTTCTTCGTCAATCAGGATTTGATCTCAGAGTACTCAGGCTTCTTGAGGAAG 197
Query 120 ATGATAAAACAGAGCAATAAGAAGAAGAAGAATCACAAGAACAGTAGAATCATTATCGAA 179
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 198 ATGATAAAACAGAGCAATAAGAAGAAAAAGAATCACAAGAACAGTAGAATCATCATCGAG 257
Query 180 GTCGAAGATTTTCCAGGTGGGTCAGATGGGTTCGACTTGGTTTCAAGATTCTGTTACGGT 239
|| |||||||||||||||||||||||||||||||||||||||| ||||||||| | |
Sbjct 258 GTTGAAGATTTTCCAGGTGGGTCAGATGGGTTCGACTTGGTTTTAAGATTCTG-T----T 312
Query 240 AATGGCGGAGGAATCTCGATCGATGTCTCAAATGTTTCCATTTTGCATTGTTCTTCTGTC 299
|||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 313 -ATGGTGGAGGAATCTCGATAGATGTCTCAAATGTGTCCATTTTGCATTGCTCTTCTGTC 371
Query 300 TTCCTTGAGATGACAGAGAAACTCTGTTCCTCGAATCTTTTGCTTCAAACAGAGAAGTTT 359
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 372 TTCCTTGAGATGACAGAGAAACTCTGTTCCTCGAATCTCTTGCTTCGAACAGAGAAGTTT 431
Query 360 TTAGAAGGTATGTTTTACTGGTCATGGAATGACATCGTTTTGTGTCTCAAGAGCTGCGAA 419
||||||| ||||| |||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 432 CTAGAAGGAATGTTCTACTGGTCCTGGAACGACATCGTATTGTGTCTCAAGAGCTGCGAG 491
Query 420 CAAGTGTTCCTACACGCAGATTCTTACGGTCTTGTTGATAAGCTTGTTTTCGGGGTTTTA 479
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 CAAGTGTTCTTACACGCTGATTCTTACGGTCTTGTTGATAAGCTTGTTTTCGGGGTTTTA 551
Query 480 GCCAAAATCGCTCAGAATTCAGACATGAGTCATGTCTTTTCATCATCCTCTCCG---T-C 535
||||||||| |||||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 552 GCCAAAATCCCTCAGAATTCAGACGTGAGTCATGTCTTTTCATCATCCTCTCCGTCTTCC 611
Query 536 T-T-CCTCTGCCTCAGCCTCCTCTCATTCGCCGGAGACGGCAAGGAATAGGTCTG-ATTC 592
| | |||||||||||||||||||||| |||||||||||||||| || |||||| | ||||
Sbjct 612 TCTGCCTCTGCCTCAGCCTCCTCTCAGTCGCCGGAGACGGCAATGATTAGGTC-GTATTC 670
Query 593 TGACAAACGGTCTACTTCGAGGTCGCTTTCTTGCAGGACAAGTAACGAGTGGTGGTTCGA 652
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 671 AGACAAAAGGTCTACTTCGAGGTCTTTTTCTTGCAGGACAAGTAACGAGTGGTGGTTCGA 730
Query 653 CGATATGTCAATTCTCGGGCCAAAAATCATTGAAAAGCTGATAAAAACACTTGGTGCGCA 712
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 731 CGATATGTCAATTCTCGGGCCAAAAATCATTGAAAAGCTGATAAATACACTTGGTGCGCA 790
Query 713 TGATAAGAACAATGACAGCTTGGTCCTCACAAGATTTCTCCTCCATTACCTCAAGACAAA 772
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 791 TGATAAGAACAATGACAGCTTGGTCCTCACAAAATTTCTTCTCCATTACCTCAAGACAAA 850
Query 773 GGTCCAAAACAAATCAAACTACAAGCTCGAGTATGCAGGTTTAGCTGATACAGCGGTTCG 832
||||| |||||| |||| | |||||||||||||| ||||||||||||||||||||||||
Sbjct 851 GGTCCCAAACAAGTCAACCAACAAGCTCGAGTATTCAGGTTTAGCTGATACAGCGGTTCA 910
Query 833 AGGAGTGGTTTTCGCGGCGAAAACCGCGTTTTCCTGCAGAAAAATGTTCTGGGTTCTTCG 892
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 911 AGGAGTGGTTTTCGCAGCGAAAACCGCGTTTTCATGCAGAAAAATGTTCTGGGTTCTGCG 970
Query 893 CGTTTTATCGGGATTTAGCATCAGTAAAGAATCAAGAATTGGTTTAGAGAGAGTTATAGG 952
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 971 AGTTTTATCGGGATTTAGCATAAGTAAAGAATCAAGAATTGGTTTAGAGAGGGTTATAGG 1030
Query 953 AGAAATGCTGGATCAAGCAACACTTGATGATCTTCTGATACCCGCAGGAGGaaaaaaaga 1012
|||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||
Sbjct 1031 AGAAATGCTGGATCAAGCAACACTTGATGATCTTCTGATACCAGCTGGAGGAAAAGGAGA 1090
Query 1013 aaaaGGGTTTTACGATGTGGATTTGGTGATAAGATTACTCAAAGTGTTTGTGAGAATTGG 1072
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1091 AAAAGGGGTTTACGATGTGGATTTGGTGATAAGATTACTCAAAGTGTTTGTAAGAATTGG 1150
Query 1073 AAACACAGAAGAAG-A-A-CAGAATTTGAAAATGAGAAGAATTGGGAAGTTGATTGATAA 1129
|||||||||||||| | | |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1151 AAACACAGAAGAAGGAGATCAGAATTTGAGAATGAGAAGAATTGGGAAGTTGATTGATAA 1210
Query 1130 GTATCTGAGAGAGATTTCTCCAGACCAGAGTCTTAAAGTGTCAAAGTTCCTTGAAGTTGC 1189
|||||| |||||||| ||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1211 GTATCTCAGAGAGATATCTCCAGACCAGAATCTTAAAGTGTCAAAGTTTCTTGAAGTTGC 1270
Query 1190 AGAGAGTTTGCCAGATTCAGCTAGAGATTGGTTTGATGGATTATACAGAGCCATTGATAT 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1271 AGAGAGTTTGCCAGATTCAGCTAGAGATTGGTTTGATGGATTATACAGAGCCATTAACAT 1330
Query 1250 CTATCTTGAGTCTCATCCAAAACTATCAACCGAGGATAGAACAAAACTATGTCGATGTCT 1309
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1331 CTATCTTGAGTCTCATCCGAAACTATCATCCGAGGATAGAACAAAACTATGTCGATGTCT 1390
Query 1310 AAACTACAAGAAATTTACATTGGAAACATGCAAACAACTTGCGCAAAATCCCAAGATCCC 1369
||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1391 AAACTACAAGAAATTGACATTGGACACATGCAAACAACTTGCAAAAAATCCCAAGATCCC 1450
Query 1370 TCCTAATATTGCAGTTCAGGCACTTAAGTCACAACAATTGTCAAACGAGACTCAACCACA 1429
||| |||||||||||||| ||||| |||||||||||||| ||||||||||||| ||||||
Sbjct 1451 TCCAAATATTGCAGTTCAAGCACTCAAGTCACAACAATTATCAAACGAGACTCGACCACA 1510
Query 1430 CTCAAGAGAGGACAAGAAGAGAGTAAACAAGATCTGGAATTCGCGTAAGTACTTAGAAGA 1489
|||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||
Sbjct 1511 CTCAAGAGAGGACAAGAACAAAGTAAACAAGATCTGGAATTCACGTAAGTACTTAGAAGA 1570
Query 1490 GAAACCAATACTGGTGCATTTGAAAGGTTTTGGGATGTCGGAGAAGTTTAAAGATGATCT 1549
|||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1571 GAAACCAATACTGGTGTGTTTGAAAGGTTTTGATATGTCGGAGAAGTTTGAAGATGATCT 1630
Query 1550 AAAGATGAATTTGGAGAGGAAGCAATGGAATAGTTCTGGAAAAAATT-GTAAGGAAAAGA 1608
|| ||||||||||||||||||||||||||||| ||||| ||||| || ||||||| ||||
Sbjct 1631 AATGATGAATTTGGAGAGGAAGCAATGGAATAATTCTG-AAAAAGTTAGTAAGGAGAAGA 1689
Query 1609 AGAGTGAAGTAGTGTCAAGTTCT 1631
||||||||||| ||||||| |||
Sbjct 1690 AGAGTGAAGTAATGTCAAGATCT 1712
Score = 78.7 bits (42), Expect = 2e-13
Identities = 52/56 (93%), Gaps = 4/56 (7%)
Strand=Plus/Plus
Query 1623 TCAAGTTCTAGTTTTCCAAGGCTTTG-T---TAATTAATTCACTCGTCAttttttt 1674
|||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1734 TCAAGTTCTAGTTTTCCAAGGCTTTGTTAAATAATTAATTCACTCGTCATTTTTTT 1789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82830899250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5