BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929891
Length=1220
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20030.1 | Symbols: | F-box and associated interaction doma... 649 0.0
AT4G09790.1 | Symbols: | pseudogene of the F-box family protei... 287 2e-76
AT3G19890.1 | Symbols: | F-box family protein | chr3:6914910-6... 152 7e-36
AT3G17620.1 | Symbols: | F-box and associated interaction doma... 128 1e-28
AT3G16880.1 | Symbols: | F-box and associated interaction doma... 60.2 4e-08
> AT3G20030.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6990254-6991462 FORWARD LENGTH=1209
Length=1209
Score = 649 bits (351), Expect = 0.0
Identities = 878/1121 (78%), Gaps = 81/1121 (7%)
Strand=Plus/Plus
Query 22 ATGACGATGATGTCCGATCTTTCACAAGTTTTGGTAG-GGAAGATACTCTCTAGGGTTCC 80
|||||||||||| |||||||| || | |||| ||| || ||||| | |||||||||||
Sbjct 1 ATGACGATGATGAGTGATCTTTCGCAGGATTTGTTAGAGG-AGATATTGTCTAGGGTTCC 59
Query 81 GATAACTTCTCTCA-GAGCAGTGA-GATCCACTTGCAAACGATGGAACGCTTTATCCAAA 138
|| ||||||||| | ||||||| | |||||||||||||||| |||||| |||||| ||||
Sbjct 60 GAGAACTTCTCT-AGGAGCAGT-ACGATCCACTTGCAAACGGTGGAACACTTTATTCAAA 117
Query 139 GATGCG-GTTTTGTGTAAAGCAGAAG---CCATGCAGCCGTTTCTAGGGTTCATGATGAT 194
||| || || | ||||||||||||| | | | | | ||||| ||||||| ||||
Sbjct 118 GAT-CGAATTCTATGTAAAGCAGAAGAAACAAGGGATCAGTTTC---GGTTCATAATGAA 173
Query 195 GGATTATAAGCTTTGTTCAATAAGATTCAATATCCAA-GGAATCC-TCAACGAAGACGG- 251
| | ||||||||||||||||| || || || | ||| |||| || | |||||||| ||
Sbjct 174 GAAGTATAAGCTTTGTTCAATGAGGTTTGATCT-CAACGGAA-CCTTAAACGAAGATGGA 231
Query 252 TG-A-AGACTTTGTGGATGCATCAATAAAGGAGATAGGTAATTTAATTAATCAAGTTGAT 309
| | || || |||||| |||| ||||||||| ||||| |||| |||||||||| |
Sbjct 232 GGTACCGAATTCGTGGATCCATCTATAAAGGAGTTAGGTCATTTTTTTAATCAAGTCAAG 291
Query 310 ATATCTAAAGTTTTTCATTGCGATGGGTTATTGTTATGCGTCA-C-AAG-GGACAACACT 366
||||||||||||||||| ||||| ||||||||||| ||||| | | ||| |||||||| |
Sbjct 292 ATATCTAAAGTTTTTCAATGCGACGGGTTATTGTTGTGCGTGACCAAAGAGGACAACATT 351
Query 367 AGCCTCGTGGTCTGGAACCCGTATATGTGTCAAACCAGGTGGATCCAACCCCG-AAGCGC 425
|| |||||||| ||||| || ||| || |||||| |||||||||| || || | || | |
Sbjct 352 AGGCTCGTGGTATGGAATCCTTATTTGGGTCAAATCAGGTGGATCGAATCCGGTAA-CAC 410
Query 426 ---TTA-CGACAGATTTGACAGCTATGCTATCGGATACGACAACAACCGTAACCAGAAAA 481
||| || | ||| ||||| |||||||||||||||||||| |||||||| || ||||
Sbjct 411 TAATTACCG-CCTATTCGACAGGTATGCTATCGGATACGACAATAACCGTAAACACAAAA 469
Query 482 TATTGAGGTTTGTGG-ATCA-T-CATGGAATAGACGGGACCCAC-G-TTT-TTGGGTACG 535
| ||||||||| ||| || | | || || || || ||| | ||| ||| |||||
Sbjct 470 TCTTGAGGTTTCTGGAAT-ATTACA-ACTTTA-ACATGAAGCACAGATTTCTTGAGTACG 526
Query 536 AAATCTATGAGTTAAAG-TCTAATTCATGGAGGGTTCTTGATATCACTCCCGGTTGGGAT 594
||||||| || || || ||||||||||||||||||||||||||| ||||| |||||||
Sbjct 527 AAATCTACGA-TTTTAGCTCTAATTCATGGAGGGTTCTTGATATCGCTCCCCGTTGGGAA 585
Query 595 ATAGAGTTTTATCAACGTGGCGTGTCTTTGAAGGGAAACACTTACTTTTTTGCTAAAGAG 654
||||||| |||||||||||| | ||||||||| ||||||||||||||| |||| || ||
Sbjct 586 ATAGAGTCTTATCAACGTGGAGCGTCTTTGAAAGGAAACACTTACTTTATTGCCAAGGAA 645
Query 655 AAAATAGTGTTCGGAGAATATGGAGAGATGCCAGAGCCGCCAGATTATTTACTTTGTTTT 714
||||||| | || ||| |||||||| | ||||||||| ||||| ||||||| ||||||
Sbjct 646 AAAATAGAATACGAAGAGGATGGAGAGTTTCCAGAGCCGGCAGATAATTTACTCTGTTTT 705
Query 715 GATTTTACGACGGAGAGCTTTGGACAGTATCTTCCTCTACCGTTTGAGCATTATATTGAA 774
|||||||||||||||||||||||||||| ||||||||| |||||| |||| ||| || |
Sbjct 706 GATTTTACGACGGAGAGCTTTGGACAGTTTCTTCCTCTGCCGTTTCAGCACTATCTTTAC 765
Query 775 GATACTGG-GACTCTATCTTATGTTAAAGGA-GAGAAACTCGCGGCGTTATATCAGAACA 832
||| ||| | |||| |||| | || || | |||||||| |||||||||| |||| |
Sbjct 766 GATGTTGGAG-CTCTCTCTTCTCTTGGAG-ATGAGAAACTTGCGGCGTTATTTCAGTGCG 823
Query 833 TG-AGTAC--AT--AT--GAGTTGGAGATATGGGTTACAAGTATGATTGAG-CCTAATGT 884
| | ||| || || ||| ||||||| |||||||||| | ||| |||| || |||
Sbjct 824 GGGA-TACCGATTTATCAGAGGTGGAGATTTGGGTTACAACTTTGACTGAGACC-AATAC 881
Query 885 GGTGTCGTGGAGAAACTTGT-TTAAA-GTTGATATGAAACCACAC-ACTGGTT-TGGGTT 940
||||| |||| | ||| | ||||| ||||||||| |||||||| || ||| | | ||
Sbjct 882 AGTGTCATGGA-ATCCTT-TCTTAAAAGTTGATATGGAACCACACTAC-GGTCGTAG-TT 937
Query 941 TTCA-GTTTGAGG-TTGAATCTGGAAGCTTCTTCATCGACGAAGAGAAGAAAGTCGCAGT 998
|| | |||||| || | ||| || |||||||| ||||| ||||||||| |||| ||
Sbjct 938 TT-ATGTTTGACTATT-ACGGTGGCAGTTTCTTCATTGACGAGGAGAAGAAACTCGCTGT 995
Query 999 CGTTTTTGA-TCTAGATGAATCTC-AA--A---GCTACAAA-ACGG--CTTACATCATTG 1048
|||||| | | | || |||||| || | ||||| | ||| ||||||||||||
Sbjct 996 TGTTTTTCAGTTT-GACGAATCTGGAATGACCCGCTACGAGGACGCAACTTACATCATTG 1054
Query 1049 GAGAGAATGGATAC-TTGAAAAGAGTGAATCTTGGTGAAGC 1088
|||||||||| ||| || |||| |||| |||||| |||||
Sbjct 1055 GAGAGAATGGCTACGTTAAAAA-AGTGCGTCTTGGAGAAGC 1094
> AT4G09790.1 | Symbols: | pseudogene of the F-box family protein
| chr4:6163414-6164655 REVERSE LENGTH=1242
Length=1242
Score = 287 bits (155), Expect = 2e-76
Identities = 572/763 (75%), Gaps = 69/763 (9%)
Strand=Plus/Plus
Query 363 CACTAGCCTCGTGGTCTGGAACCCGTATATGTGTCAAACCAGGTGGATCCAACCCCGA-A 421
||||||||||||||| |||||||||||| || | ||||||||||||||| ||||| || |
Sbjct 367 CACTAGCCTCGTGGTATGGAACCCGTATTTGGGACAAACCAGGTGGATCAAACCCAGACA 426
Query 422 GCGCTTACGACAGATTTGACAG-CTATGCTATCGGATACGACAACAAC-CG--TAACCAG 477
||||| | ||||||| ||| | |||||| | ||||||||||| ||| | |||||
Sbjct 427 -CGCTTTCCACAGATTAGAC-GTGTATGCTCTAGGATACGACAAAAACTTGAAAAACCAT 484
Query 478 AAAATATTGAGGTTTGTGGATCA-TCATGGAA--TAGAC-GGGACCCACGT-T-TT-T-G 529
||||| ||||||||||||||| | | | ||| | | | | || || | | || | |
Sbjct 485 AAAATCTTGAGGTTTGTGGAT-AGTTA-CGAACCT-G-CTGTGAAGCA-TTCTATTATAG 539
Query 530 GGTACGAAATCTATGAGTTAAAGTCTAATTCATGGAGGGTTCTTGATATCACTCCCGGTT 589
||||||| | ||| || ||||||||| ||||||||||||||||| |||||| | |
Sbjct 540 AACACGAAATTTTTGATTTGAAGTCTAATGCATGGAGGGTTCTTGATGCCACTCCTGACT 599
Query 590 GGGATATAGAGTT-TTATCAACGTGGCGTGTCTTTGAAGGGAAACACTTACTTTTTTGCT 648
|||| ||||| || |||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 600 GGGAGATAGA-TTCTTATCAACGTGGCGTGTCTTTGAAAGGAAATACTTACTTTTTTGCT 658
Query 649 AAAGAGAAAATAGTGTTCGGA-GA--AT-ATG--G-AGAGAT-GCCAGAGCCGCCA-GAT 699
||||||||||||||| | ||| | || ||| | || ||| | ||| | | |||
Sbjct 659 AAAGAGAAAATAGTGGT-GGAAGGGGATGATGTTGTAGTGATTGA-AGATTT-CAAAGAT 715
Query 700 TATTT-ACTTTGTTTTGATTTTACGACG-GAGAGCTTT-----GGAC-A-GTATCTTCCT 750
| ||| | | |||||||||||||| | | ||||| ||| |||| | || || |||
Sbjct 716 TTTTTGA-TCTGTTTTGATTTTACAA-GTGAGAGATTTAATTTGGACCACGT--CTGCCT 771
Query 751 CTACCGTTTGAG-CATTATATTGAAGATACTGGGACTCTATCTTA-TGTTAAAGGAGAGA 808
||||||||| | | ||| | || ||| || | |||||| ||| | ||||| || ||||
Sbjct 772 CTACCGTTTCACTC-TTACAATGGAGAGACCGTGACTCTTTCT-AGTGTTAGAGAAGAGC 829
Query 809 AACTCGCGGCGTTATATCAGAACATGAGTACATATGAGTTGGAGATATGGGTTAC-AAGT 867
| || || | |||||||||| || || ||| | | | |||||||||||||||| || |
Sbjct 830 AGCTAGCAGTGTTATATCAG--CAGGA-TACTTGTTTGATGGAGATATGGGTTACGAA-T 885
Query 868 ATGATTGAGCCTAATGTGGTGTCGTGGAGAAACTTGTTTA-A--AGTTGATATGAAACCA 924
| |||||| || |||||||||| ||||| || ||||| | ||| |||||| |||||
Sbjct 886 AAGATTGAACCGGATGTGGTGTCATGGAGCAAGGTGTTTTTAGCAGTGGATATGGAACCA 945
Query 925 CACACTGGTT-TGGGTTT-TCA-GTTTGAGGTTGAATCTGGAAGCTTCTTCATCGACGAA 981
| |||||||| | ||| || ||||| || |||| || |||||||| |||||
Sbjct 946 CTCACTGGTTCT---TTTATCCCGTTTGCTTTTTTCGCTGGGAGTTTCTTCATTGACGAG 1002
Query 982 GAGAAGAAAGTCGCAGTCGTTTTTGATCTAGATGAATCTCAAAGCTACAAAACG-GCTTA 1040
||||| ||| |||| || || || ||| ||| || | | | || | | | |||||
Sbjct 1003 GAGAAAAAAATCGCTGTGGTATTCGATAAAGACCAAGAGGAGATCAACGACA-GAGCTTA 1061
Query 1041 CATCATTGGAGAGAATGGATACTTGAAAAGA-GTGAATCTTGG 1082
| | ||||||||||||||||||| ||| || ||| |||||||
Sbjct 1062 CCTGATTGGAGAGAATGGATACTACAAA-GAAGTGGATCTTGG 1103
> AT3G19890.1 | Symbols: | F-box family protein | chr3:6914910-6916142
REVERSE LENGTH=1233
Length=1233
Score = 152 bits (82), Expect = 7e-36
Identities = 244/320 (76%), Gaps = 19/320 (6%)
Strand=Plus/Plus
Query 706 CTTTGTTTTGATTTTACGACGGAG-AGCTTTGGACAGTATCTTCCTCTACCGTTTGAGCA 764
||||||||| | || || |||||| || |||| | | | | || || | |||||| || |
Sbjct 649 CTTTGTTTTAACTTCACAACGGAGAAG-TTTGAAAATTTTATTGCTATGCCGTTTAAGTA 707
Query 765 TTATATTGAAGATAC--TGGGACTCTATCTTATGTT--AAAGGAGAGAAACTCGCGGCGT 820
| ||| ||| |||| ||| || || |||| |||| ||| || | ||||| ||||| |
Sbjct 708 TCATA-GGAA-ATACGTTGGAACACTTTCTTGTGTTGGAAATGA-A-AAACTAGCGGC-T 762
Query 821 -TATATCAGAACATGAG-TACATATGAGTTGGAGATATGGGTTACAAGTATGATTGAG-C 877
|||||||| | || | |||| ||| ||| |||||||| || | || ||||||| |
Sbjct 763 CTATATCAGCGC-TGGGATACAGGCGAGATGGCCATATGGGTAACCACTAAGATTGAGTC 821
Query 878 CTAATGTGGTGTCGTGGAGAAACTTGTTTAAAGTTGATATGAAACCACACACT-GGTTTG 936
| |||| ||||| |||||| |||||||||||||||||||||||||||| | | ||||||
Sbjct 822 C-AATGAGGTGTTGTGGAGCAACTTGTTTAAAGTTGATATGAAACCACTCGTTAGGTTTG 880
Query 937 GGTTTT--CAGTTTGAGGTTGAATCTGGAAGCTTCTTCATCGACGAAGAGAAGAAAGTCG 994
| ||| || | | | | |||| |||| || || ||||| ||||||||||||||| |||
Sbjct 881 GCTTTCAACAATGTAAAGATGAAGCTGGCAGTTTTTTCATTGACGAAGAGAAGAAACTCG 940
Query 995 CAGTCGTTTTTGATCTAGAT 1014
| || |||||| ||||||||
Sbjct 941 CGGTGGTTTTTAATCTAGAT 960
> AT3G17620.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6026446-6027694 REVERSE LENGTH=1249
Length=1249
Score = 128 bits (69), Expect = 1e-28
Identities = 433/596 (73%), Gaps = 76/596 (13%)
Strand=Plus/Plus
Query 524 TTT-TTGGGTACGAAATCTATGAGTTAAAGTCTAATTCATGGAGGGTTCTTGATATCACT 582
||| ||| ||||||||| || ||||||||||||||||||||||||||||| ||| |||||
Sbjct 523 TTTGTTGAGTACGAAATATACGAGTTAAAGTCTAATTCATGGAGGGTTCTCGATGTCACT 582
Query 583 CCCGGTTGGGATA-TAGAGTTTTAT-CAACGTGGCGTGTCTTTGAAGGGAAACACTTACT 640
||| ||||| | ||||||||||| || || || || ||| | |||||||| ||||| |
Sbjct 583 TCCGACTGGGA-AGTAGAGTTTTATGCA-CGAGGTGTCTCTCTCAAGGGAAATACTTA-T 639
Query 641 TT-TTTGCTAAAGAGAAAATAGTGTTCGGAGAATATGGAG-AG-A-TGCC-AGAGCCGCC 695
| ||||||| ||| || || ||| |||| || || || | | | | | |
Sbjct 640 TGGTTTGCTACAGACAA----GT-TTCC-AGAA-ATC-AGCAGTAAT-CTTATA-CATAG 689
Query 696 AGATTATTTACTT--T--GTTTTGATTTTACGA-CGGAGAGCTTTGGACAGTATCTTCCT 750
| |||||| ||| | ||||| ||||||| | ||||||| ||||| | | ||||| |
Sbjct 690 TGTTTATTT-CTTGCTCTGTTTTAATTTTAC-ATCGGAGAGATTTGGGCCGCGTCTTCAT 747
Query 751 CTACCGT-TTGAGCATTAT--ATTGAAGATACTGGGACTCTATCTTA-TGTTAAAGGAGA 806
| |||| || | | | || || | |||||||| || ||| ||| | ||||| || |||
Sbjct 748 TTGCCGTGTT-ACCCT-ATGGAT-GTAGATACTGTGAGTCTTTCT-AGTGTTAGAGAAGA 803
Query 807 GAAACTCGCGGCGTTATATCAGAACATGAGTACATA-TGAG-T-TGGAGATATGGGTTAC 863
| |||| || | ||||| |||| | | || ||| | | | | ||||||| ||||||||
Sbjct 804 GCAACTTGCTGTGTTATTTCAG--CGTAAGGACA-ACTTACATATGGAGATTTGGGTTAC 860
Query 864 AAGTATGATTGAGCCT-AATGTGGTG-TCGTGGAGAAACTTGTT-TAA--AGTTGATATG 918
| || |||||| ||| || | |||| | |||||| || ||||| | | ||| ||||||
Sbjct 861 GACTAAGATTGAACCTGAA-GAGGTGAT-GTGGAGCAAGTTGTTCTTAGCAGTGGATATG 918
Query 919 AAACCACACACTGGTTTGGGTTTTCAGTTTG-AGGTTGAATCTG-GAAGCTTCTTCATCG 976
|||||| ||||| ||| | |||||| | ||| | || || | ||| |||| |
Sbjct 919 CAACCACTCACTGATTT---TA---AGTTTGGAA-TTGCAGATGCGA-GTTTCATCATTG 970
Query 977 ACGAAGAGAAGAAAGTCGCAGTCGT-TTT--T---GATCTA-GATG-AATCT--CAAAGC 1026
|||||||||||||||| | || || ||| | || | | |||| ||| | | | |
Sbjct 971 ACGAAGAGAAGAAAGTTGTTGTAGTCTTTGCTAAAGA-CAAAGATGTAATGTATCCCA-C 1028
Query 1027 T-ACAAAACGGCTTACATCATTGGAGAGAATGGATACTTGA-AAAGA-GTGAATCT 1079
| |||| || |||||||||||||||||| ||||||| || | ||||| ||| ||||
Sbjct 1029 TCACAACACAGCTTACATCATTGGAGAGGATGGATA-TT-ACAAAGAAGTGGATCT 1082
> AT3G16880.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5766733-5767830 FORWARD LENGTH=1098
Length=1098
Score = 60.2 bits (32), Expect = 4e-08
Identities = 41/45 (91%), Gaps = 2/45 (4%)
Strand=Plus/Plus
Query 1036 GCTTACATCATTGGAGAGAATGGATACTTGA-AAAGAGTGAATCT 1079
||||||||||||||||||||||||||||| | ||| |||| ||||
Sbjct 967 GCTTACATCATTGGAGAGAATGGATACTTCAGAAA-AGTGGATCT 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59939450730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5