BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929896
Length=229
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19880.1 | Symbols: | F-box and associated interaction doma... 296 5e-80
AT4G05080.1 | Symbols: | F-box and associated interaction doma... 250 4e-66
AT1G67450.1 | Symbols: | F-box and associated interaction doma... 174 3e-43
> AT3G19880.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6911435-6912604 REVERSE LENGTH=1170
Length=1170
Score = 296 bits (160), Expect = 5e-80
Identities = 194/209 (93%), Gaps = 7/209 (3%)
Strand=Plus/Plus
Query 21 ATGACGATGATGAGCGATCTTACGCAGGATTTGGTAGAGGAGATACTGTGTAGGGTTCCT 80
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGACGATGATGAGTGATCTTACGCAGGATTTGGTAGAGGAGATACTGTCTAGGGTTCCG 60
Query 81 ATAACTTCTCTAGGAGCAGTGAGATCTACTTGCAAAGGATGGAACGCTTTATCCAAAGAA 140
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 61 ATAACTTCTCTAGGAGCAGTGAGATCCACCTGCAAAGGATGGAACGCTTTATCCAAAGAA 120
Query 141 CGGATTCTATGTATAGGAGAACCAAAACAACAGTTTCTACTTTCTAGGGTTCATGTTGTT 200
||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||
Sbjct 121 CGGATTCTATGTATAGGAGAACCAAAACAGCAGTTTCTA-------GGGTTCATGATGTT 173
Query 201 GGATTATAGGCTTTGTTCAATGAGGTTCA 229
||||||||||||||| |||||||||||||
Sbjct 174 GGATTATAGGCTTTGCTCAATGAGGTTCA 202
> AT4G05080.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:2603001-2604176 FORWARD LENGTH=1176
Length=1176
Score = 250 bits (135), Expect = 4e-66
Identities = 187/211 (89%), Gaps = 8/211 (4%)
Strand=Plus/Plus
Query 21 ATGACGATGATGAGCGATCTTACGCAGGATTTGGTAG-AGGAGATACTGTGTAGGGTTCC 79
|||||||||||| ||||||||||||||||||||| | | |||||| ||| |||||||||
Sbjct 1 ATGACGATGATGTTCGATCTTACGCAGGATTTGGT-GAAAGAGATATTGTCTAGGGTTCC 59
Query 80 TATAACTTCTCTAGGAGCAGTGAGATCTACTTGCAAAGGATGGAACGCTTTATCCAAAGA 139
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 60 GATAACTTCCCTAGGAGCAGTGAGATCCACTTGCAAAGGATGGAACGCTTTATCCAAAGA 119
Query 140 ACGGATTCTATGTATAGGAGAACCAAAACAACAGTTTCTACTTTCTAGGGTTCATGTTGT 199
||||||||||||| || | |||||||||| ||||||| | | | |||||||||| |||
Sbjct 120 TCGGATTCTATGTAAAGCAAAACCAAAACAGCAGTTTC-A-T--CAAGGGTTCATGCTGT 175
Query 200 -TGGATTATAGGCTTTGTTCAATGAGGTTCA 229
|| ||||||||||| |||||||||||||||
Sbjct 176 CTG-ATTATAGGCTTCGTTCAATGAGGTTCA 205
> AT1G67450.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:25266163-25267359 FORWARD LENGTH=1197
Length=1197
Score = 174 bits (94), Expect = 3e-43
Identities = 138/159 (87%), Gaps = 3/159 (2%)
Strand=Plus/Plus
Query 21 ATGACGATGATGA-G-C-GATCTTACGCAGGATTTGGTAGAGGAGATACTGTGTAGGGTT 77
||||||||||||| | | |||||| || | ||||||||||| ||||| ||| |||||||
Sbjct 1 ATGACGATGATGATGTCTGATCTTCCGAATGATTTGGTAGAAGAGATTTTGTCTAGGGTT 60
Query 78 CCTATAACTTCTCTAGGAGCAGTGAGATCTACTTGCAAAGGATGGAACGCTTTATCCAAA 137
|| ||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 61 CCGATAACATCTCTAGGAGCAGTGAGATCTACTTGCAAACGATGGAACGGTTTATCCAAA 120
Query 138 GAACGGATTCTATGTATAGGAGAACCAAAACAACAGTTT 176
|| || ||| |||||| |||||| |||| |||||||||
Sbjct 121 GATCGTATTGTATGTAAAGGAGATGCAAATCAACAGTTT 159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10304888545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5