BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929903
Length=1589
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19930.1 | Symbols: STP4, ATSTP4 | sugar transporter 4 | chr... 2693 0.0
> AT3G19930.1 | Symbols: STP4, ATSTP4 | sugar transporter 4 | chr3:6934773-6937120
FORWARD LENGTH=2099
Length=2099
Score = 2693 bits (1458), Expect = 0.0
Identities = 1550/1594 (97%), Gaps = 7/1594 (0%)
Strand=Plus/Plus
Query 1 TTTGATTTTTT-GCAAATCGGAGAAATGGCCGGAGGATTCGTCAGTCAAACGCCGGGTGT 59
|||| |||||| ||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 252 TTTG-TTTTTTAGCAAATCAAAGAAATGGCCGGAGGGTTCGTCAGTCAAACGCCGGGTGT 310
Query 60 TCGGAACTACAATTACAAACTGACACCGAAAGTGTTTGTAACATGTTTCATCGGTGCTTT 119
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 311 TCGGAACTACAATTACAAACTGACACCGAAAGTGTTTGTGACATGTTTCATCGGTGCTTT 370
Query 120 TGGTGGTCTCATCTTCGGATACGATCTCGGGATCTCAGGAGGGGTAACCTCAATGGAGCC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TGGTGGTCTCATCTTCGGATACGATCTCGGGATCTCAGGAGGGGTAACCTCAATGGAGCC 430
Query 180 ATTCTTGGAAGAGTTCTTCCCTGACGTCTACAAGAAGATGAAGAACGCACACGAGAACGA 239
|||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||
Sbjct 431 ATTCTTGGAAGAGTTCTTCCCTTACGTCTACAAGAAGATGAAGAGCGCACATGAGAACGA 490
Query 240 GTACTGTCGATTTGATAGTGAGCTTCTCACTCTCTTCACTTCGTCTCTCTATGTGGCGGC 299
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 491 GTACTGTCGATTTGATAGTCAGCTTCTCACTCTCTTCACTTCGTCTCTCTATGTGGCGGC 550
Query 300 TTTGATATCTTCTCTCTTTGCCTCCACCATTACTCGAGTTTTCGGAAGGAAATGGTCGAT 359
|||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 551 TTTGGTGTCTTCTCTCTTTGCCTCCACCATTACTAGAGTTTTCGGAAGGAAATGGTCGAT 610
Query 360 GTTCCTCGGTGGTTTCACCTTCTTTATCGGGTCTGCCTTCAACGGCTTTGCCCAAAACAT 419
||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 611 GTTTCTCGGTGGTTTCACCTTCTTCATCGGTTCTGCTTTCAACGGCTTTGCCCAAAACAT 670
Query 420 CGCTATGCTTCTCATTGGTCGTATTCTACTTGGTTTTGGAGTCGGATTCGCCAATCAATC 479
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 671 CGCTATGCTTCTCATTGGTCGTATCCTACTTGGTTTCGGAGTCGGATTCGCCAATCAATC 730
Query 480 TGTACCGGTTTATTTATCAGAAATGGCTCCTCCGAATCTAAGAGGAGCTTTTAACAACGG 539
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 731 TGTACCGGTTTATTTATCAGAAATGGCTCCTCCGAATCTAAGAGGAGCTTTCAACAACGG 790
Query 540 GTTTCAAGTAGCGATTATCTTTGGTATTGTTGTTGCAACGATCATCAATTACTTCACCGC 599
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 791 GTTTCAAGTAGCGATTATCTTTGGTATTGTGGTTGCAACGATCATCAATTACTTCACCGC 850
Query 600 ACAGATGAAAGGAAACATCGGATGGAGAATCTCTCTCGG-TCTAGCTTGTGTCCCTGCAG 658
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 851 ACAGATGAAAGGAAACATCGGATGGAGAATCTCTCTCGGAT-TAGCTTGTGTCCCTGCAG 909
Query 659 TTATGATCATGATCGGAGCTCTGATCCTTCCCGACACTCCGAACTCTCTCATCGAACGTG 718
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 910 TGATGATCATGATCGGAGCTCTGATCCTTCCCGACACTCCCAACTCTCTCATCGAACGTG 969
Query 719 GCTACACCGAAGAGGCCAAGCAAATGCTTCAGTCCATCCGAGGAACCAATGAAGTCGATG 778
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 970 GCTACACCGAAGAGGCCAAGGAAATGCTTCAGTCCATCCGAGGAACCAATGAAGTCGATG 1029
Query 779 AAGAGTTTCAAGATCTCATTGATGCAAGTGAGGAGTCCAAGCAAGTGAAACACCCATGGA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 AAGAGTTTCAAGATCTCATTGATGCAAGTGAGGAGTCCAAGCAAGTGAAACACCCATGGA 1089
Query 839 AGAACATCTTGCTTCCTCGTTACAGACCACAATTGATCATGACTTGCTTCATTCCTTTCT 898
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 AGAACATCATGCTTCCTCGTTACAGACCACAATTGATCATGACTTGCTTCATTCCTTTCT 1149
Query 899 TTCAACAACTTACCGGAATCAATGTCATTACCTTCTACGCCCCGGTTTTGTTCCAAACCC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 TTCAACAACTTACCGGAATCAATGTCATTACCTTCTACGCCCCGGTTTTGTTCCAAACCC 1209
Query 959 TCGGGTTCGGTAGCAAAGCTTCCCTCCTATCAGCTATGGTAACGGGTATCATCGAGCTCT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 TCGGGTTCGGTAGCAAAGCTTCCCTCCTATCAGCTATGGTAACGGGTATCATCGAGCTCT 1269
Query 1019 TGTGTACCTTCGTCTCTGTTTTTACAGTGGATAGGTTTGGAAGAAGAGTCTTGTTCCTCC 1078
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1270 TGTGTACCTTCGTCTCTGTTTTTACAGTGGATAGGTTTGGAAGAAGAATCTTGTTCCTCC 1329
Query 1079 AAGGAGGTATCCAGATGCTTATCTCTCAGATCGCTATTGGAGCCATGATTGGGGTCAAAT 1138
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1330 AAGGAGGTATCCAGATGCTTGTCTCTCAGATCGCTATTGGAGCCATGATTGGAGTCAAAT 1389
Query 1139 TCGGAGTGGCTGGAACAGGAAACATAGGGAAATCAGATGCCAATCTAATCGTGGCACTGA 1198
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1390 TTGGAGTGGCTGGAACAGGAAACATAGGGAAAAGTGATGCCAATCTAATCGTGGCACTGA 1449
Query 1199 TCTGCATCTATGTAGCGGGTTTCGCCTGGTCATGGGGACCTTTGGGATGGTTGGTTCCTA 1258
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1450 TCTGCATCTATGTAGCGGGTTTCGCCTGGTCATGGGGACCGTTGGGATGGTTGGTTCCTA 1509
Query 1259 GTGAGATATCTCCACTAGAGATCCGATCAGCAGCTCAAGCCATAAACGTTTCGGTCAACA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1510 GTGAGATATCTCCACTAGAGATCCGATCAGCAGCTCAAGCCATAAACGTTTCGGTCAACA 1569
Query 1319 TGTTCTTCACATTCCTTGTGGCTCAGCTCTTCCTCACTATGCTTTGTCACATGAAATTCG 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1570 TGTTCTTCACATTCCTTGTGGCTCAGCTCTTCCTCACTATGCTTTGTCACATGAAATTCG 1629
Query 1379 GACTATTCTTCTTCTTCGCCTTCTTTGTGGTCATAATGACGGTATTCATCTACATGATGT 1438
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 1630 GACTATTCTTCTTCTTCGCCTTCTTTGTTGTCATAATGACAATATTCATCTACTTGATGT 1689
Query 1439 TGCCTGAGACAAAGAATGTGCCAATCGAAGAGATGAACAGAGTGTGGAAGGCACATTGGT 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1690 TGCCTGAGACAAAGAATGTGCCAATCGAAGAGATGAACAGAGTGTGGAAGGCACATTGGT 1749
Query 1499 TCTGGGGAAAGTTTATTCCTGATGAAGCTGTTAACATGGGTGCTGCTGAGATGCAACAGA 1558
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1750 TCTGGGGAAAGTTTATTCCTGATGAAGCTGTCAATATGGGTGCTGCTGAGATGCAACAGA 1809
Query 1559 AGTCCGTATGATGAT---CAAGAATGAAGTTTTC 1589
||||||||||||||| ||||||||||||||||
Sbjct 1810 AGTCCGTATGATGATGATCAAGAATGAAGTTTTC 1843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78463451835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5