BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929910

Length=1031
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G24748.1 | Symbols:  | pseudogene of transcriptional factor ...   311    9e-84
  AT5G49945.1 | Symbols:  | Protein of unknown function (DUF1682)...   182    8e-45


> AT2G24748.1 | Symbols:  | pseudogene of transcriptional factor 
B3 family protein | chr2:10536845-10537829 FORWARD LENGTH=772
Length=772

 Score =  311 bits (168),  Expect = 9e-84
 Identities = 288/343 (84%), Gaps = 20/343 (6%)
 Strand=Plus/Plus

Query  242  AAGAGAAGAAGCAGAGTCTTCACTAGATCTCTCTTATTTCGTGGCTAATGTCACATCTTC  301
            |||| |||||||||||||||||||||||||||||| ||| ||||||||||||||  ||||
Sbjct  296  AAGA-AAGAAGCAGAGTCTTCACTAGATCTCTCTTGTTTTGTGGCTAATGTCACGCCTTC  354

Query  302  GAATATACGTTATGACTCACTGAATCTTCCAATGAGATTTGTGAGGGCAAATGGTGTAGA  361
            ||||   | | |   |  |   | ||||||| |||| ||||||||| |||||||| ||||
Sbjct  355  GAAT---C-T-A---C--A---A-TCTTCCATTGAGTTTTGTGAGG-CAAATGGTCTAGA  399

Query  362  CACAAGATGTGGAGAGATGATTCTGATTAACGAAAATGGCAAATCATGGACTGTAGATTT  421
            || ||| |||||||||||||||||||| |||||||| |||| ||||||||||||||| ||
Sbjct  400  CAAAAGGTGTGGAGAGATGATTCTGATCAACGAAAAAGGCAGATCATGGACTGTAGACTT  459

Query  422  GAAACGAAAGAAATCATGTGGAACTACTTACATTAGACGAGGATGGAGAAGTTTTTGTCA  481
            |||||||||||| ||||||  |||||||||||| | |||||||||| ||||||| ||| |
Sbjct  460  GAAACGAAAGAACTCATGTCCAACTACTTACATCAAACGAGGATGGGGAAGTTTCTGTAA  519

Query  482  TGCTAATGGACTTAGAGCTGGAAGTTCCTTCACTTTCAAACTCATCCAAAGAGGAGCAAC  541
            ||| |||||| ||||||||||||||| ||| | |||||||||  |||||||||| | |||
Sbjct  520  TGCCAATGGATTTAGAGCTGGAAGTTTCTTTAGTTTCAAACTGTTCCAAAGAGGTGGAAC  579

Query  542  TTT-GTGTTTACGTTTATCCC-CTAGAGAGCTAAAAGAAGAAG  582
            |   | ||||||||| ||||| | |||||| || |||||||||
Sbjct  580  TCCAG-GTTTACGTTCATCCCAC-AGAGAGGTAGAAGAAGAAG  620


> AT5G49945.1 | Symbols:  | Protein of unknown function (DUF1682) 
| chr5:20317405-20319830 FORWARD LENGTH=1854
Length=1854

 Score =  182 bits (98),  Expect = 8e-45
 Identities = 144/166 (87%), Gaps = 4/166 (2%)
 Strand=Plus/Plus

Query  4     AGAAGG-TAGCAAAAAAGATGCTAAAGGAGCTAAGGGATTTGCAGAGATTCGCTGAGATA  62
             |||||| | |||||||  |||| ||||||| | ||||||||||| ||||| |||| ||| 
Sbjct  858   AGAAGGCT-GCAAAAACTATGCAAAAGGAGATGAGGGATTTGCAAAGATTTGCTGGGATT  916

Query  63    GTGTCTCCTCCCGCCGGGAGGAAGTGGGTGTCCGAGGAGTTAG-CTGTGATCTCTGAATC  121
             ||||||||||| || || ||||| |||||||| |||||||| | || |||||||||||||
Sbjct  917   GTGTCTCCTCCTGCTGGAAGGAAATGGGTGTCGGAGGAGTTCGCCT-TGATCTCTGAATC  975

Query  122   CAAGGAAGTTGCTGCGGATATGATCACAGACACTGTGCTTGATCAG  167
             ||||||||||||||||||| ||||||| |||||||| |||||||||
Sbjct  976   CAAGGAAGTTGCTGCGGATTTGATCACTGACACTGTTCTTGATCAG  1021



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 50535551882


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5