BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929919
Length=1457
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20015.1 | Symbols: | Eukaryotic aspartyl protease family p... 2278 0.0
> AT3G20015.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr3:6978477-6980368 REVERSE LENGTH=1892
Length=1892
Score = 2278 bits (1233), Expect = 0.0
Identities = 1385/1457 (95%), Gaps = 15/1457 (1%)
Strand=Plus/Plus
Query 1 TGGCTGTGGCGTTGTAAACAATGctcctccctctcttcttcttcttcttcttcc-tcctc 59
||||| |||||||||||||||||||||||||||||||||||||| | ||| ||| | |||
Sbjct 191 TGGCTCTGGCGTTGTAAACAATGCTCCTCCCTCTCTTCTTCTTC-T-TTC-TCCAT-CTC 246
Query 60 catctcca--tct-ttcttcttcctcaatctccttccCTGATTTTCAAATCATCGACGTT 116
|||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 247 CATCTCCATCTCTCTTCTTCTTCTTCAATCTCCTTCCCTGATTTTCAAATCATCGACGTT 306
Query 117 TTACAACCTCCTCTCACCGTCACCGGAACTCTTCCCGATTTCAACAACACCCATTTCTCC 176
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 307 TTACAACCTCCTCTCACCGTCACTGCAACTCTTCCCGATTTCAACAACACCCATTTCTCC 366
Query 177 GATGAATCCAATTCTAAATACACTCTCCGTCTTCTCCACCGCGACAGATTCCCTTCCGTC 236
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 367 GATGAATCCAGTTCTAAGTACACTCTCCGTCTTCTCCACCGCGACAGATTCCCTTCAGTC 426
Query 237 ACTTACCGTAACCACCACCACCGTCTCCATGCTCGTATGCGTAGAGATACAGACAGAGTC 296
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 427 ACTTACCGTAACCACCACCACCGTCTCCATGCTCGTATGCGCAGAGACACAGACAGAGTC 486
Query 297 TCCGCCATTCTCCGCCGCATTTCTGGGAAAGTTGTTGTAGCTTCTTCCGATTCTAGATAC 356
|||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||
Sbjct 487 TCCGCCATTCTCCGCCGCATTTCTGGGAAA---GTTATACCTTCTTCCGATTCTAGATAC 543
Query 357 GAGGTTAACGATTTTGGGTCCGATGTTGTTTCCGGTATGGATCAAGGAAGTGGTGAGTAT 416
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 544 GAGGTTAACGATTTTGGGTCCGATATTGTTTCCGGTATGGATCAAGGAAGTGGTGAGTAT 603
Query 417 TTCGTTAGAATCGGCGTCGGAAGTCCGCCGAGAGATCAGTACATGGTCATTGACTCCGGT 476
||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 604 TTCGTCAGAATCGGCGTCGGAAGTCCTCCGAGAGATCAGTACATGGTCATTGATTCCGGT 663
Query 477 AGTGATATGGTTTGGGTTCAGTGCCAGCCTTGTAAGCTCTGTTATAAACAATCCGACCCG 536
|| ||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 664 AGCGATATGGTTTGGGTTCAATGTCAGCCTTGTAAGCTCTGTTACAAACAATCCGACCCG 723
Query 537 GTTTTTGACCCGGCTAAATCCGGGTCTTACACTGGAGTCTCTTGCGGTTCTTCTGTCTGT 596
|||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 724 GTTTTTGACCCGGCTAAATCCGGGTCTTACACTGGAGTCTCTTGTGGCTCTTCCGTCTGT 783
Query 597 GACCGGATTGAAAACTCCGGCTGTCACTCCGGTGGGTGCCGTTATGAGGTCATGTACGGA 656
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 784 GACCGGATTGAAAACTCCGGTTGTCACTCCGGTGGGTGCCGTTACGAGGTCATGTACGGA 843
Query 657 GACGGGTCTTACACGAAAGGG-ACGTTAGCTCTTGAAACGCTGACGTTTGCTAAGACGGT 715
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 844 GACGGGTCTTACACG-AAGGGAACGTTAGCTCTCGAAACGCTGACGTTTGCTAAGACGGT 902
Query 716 GGTTAGAAACGTTGCCATGGGATGTGGTCACCGGAACAGAGGAATGTTTATTGGAGCTGC 775
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 903 GGTTAGAAACGTTGCGATGGGATGTGGTCACCGGAATAGAGGAATGTTTATTGGAGCTGC 962
Query 776 TGGTTTACTGGGTATTGGAGGCGGTTCAATGTCGTTTGTGGGTCAATTGAGCGGTCAAAC 835
|||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 963 CGGTTTATTGGGTATCGGAGGCGGTTCAATGTCGTTTGTGGGTCAATTAAGCGGTCAAAC 1022
Query 836 CGGCGGTGCGTTCGGTTATTGTTTAGTGAGTCGAGGCACCGACTCGACCGGTTCATTGGT 895
||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1023 CGGTGGTGCGTTCGGTTATTGTTTAGTGAGTCGTGGCACTGACTCGACCGGTTCATTGGT 1082
Query 896 ATTCGGGCGGGAAGCTTTGCCCGTTGGTGCCTCGTGGGTACCGTTGGTCCGGAACCCACG 955
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1083 ATTCGGGCGGGAAGCGTTGCCCGTTGGTGCCTCGTGGGTCCCGTTGGTCCGGAACCCGCG 1142
Query 956 GGCTCCGAGTTTTTACTATGTTGGGCTCAAGGGCCTCGGGGTCGGAGGCGTCCGGATTCC 1015
|||||| ||||||||||| ||||||||||||||||| || || |||||||||||||||||
Sbjct 1143 GGCTCCAAGTTTTTACTACGTTGGGCTCAAGGGCCTTGGAGTAGGAGGCGTCCGGATTCC 1202
Query 1016 GTTACCGGATGGTGTCTTTGACCTGACGGAAACCGGTGACGGCGGTGTGGTTATGGATAC 1075
||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1203 GTTACCGGATGGTGTTTTTGACCTGACTGAAACCGGTGACGGTGGTGTGGTTATGGATAC 1262
Query 1076 CGGAACCGCCGTCACAAGGCTTCCGACGG-GTGCTTATGCCGCATTTCGAGATGGATTCA 1134
|||||| ||||||||||| ||||| |||| | ||||| | ||| ||||||||||||||||
Sbjct 1263 CGGAACAGCCGTCACAAGACTTCCCACGGCG-GCTTACGTCGCTTTTCGAGATGGATTCA 1321
Query 1135 AGTCGCAGACAGCGAATTTGCCGCGGGCTTCCGGTGTATCGATATTCGACACGTGTTATG 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 AGTCGCAGACAGCGAATTTGCCGCGGGCTTCCGGTGTATCGATATTCGACACGTGTTATG 1381
Query 1195 ATCTGTCAGGATTTGTTTCGGTACGAGTCCCGACCGTGTCGTTCTATTTCACGGAAGGTC 1254
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 ATCTGTCAGGGTTTGTTTCGGTACGAGTCCCGACCGTGTCGTTCTATTTCACGGAAGGTC 1441
Query 1255 CGGTTTTGACATTACCGGCGAGGAATTTTCTGATGCCGGTGGATGATTCGGGGACATATT 1314
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1442 CGGTTTTGACATTACCGGCGAGGAATTTTCTGATGCCGGTGGATGATTCGGGAACGTATT 1501
Query 1315 GTTTTGCGTTTGCGGCGTCTCCGACGGGTTTGTCGATAATAGGGAACATACAACAAGAAG 1374
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1502 GTTTTGCGTTTGCGGCGTCTCCGACGGGTTTGTCAATAATAGGGAACATACAACAAGAAG 1561
Query 1375 GGATTCAAGTATCTTTCGACGGAGCCAATGGCTTTGTTGGGTTTGGCCCCAACGTTTGCT 1434
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1562 GGATTCAAGTATCTTTCGACGGAGCCAATGGCTTTGTTGGTTTTGGCCCCAACGTTTGCT 1621
Query 1435 AGCGGTTAAAATAGAGA 1451
||||||||| |||||||
Sbjct 1622 AGCGGTTAAGATAGAGA 1638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71836979895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5