BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929937
Length=3424
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20150.1 | Symbols: | Kinesin motor family protein | chr3:7... 5014 0.0
> AT3G20150.1 | Symbols: | Kinesin motor family protein | chr3:7031332-7037010
FORWARD LENGTH=3882
Length=3882
Score = 5014 bits (2715), Expect = 0.0
Identities = 3208/3438 (93%), Gaps = 65/3438 (2%)
Strand=Plus/Plus
Query 1 GCTGTTTCATTTGGGAAGCCATGGCAGACAATCGCATCGCAGGAACCTTACCCACTTCCT 60
||||| ||||||| |||||||||||||||||||||||||| |||| |||||| |||||||
Sbjct 61 GCTGTGTCATTTGAGAAGCCATGGCAGACAATCGCATCGCCGGAAGCTTACCGACTTCCT 120
Query 61 CTAAATGGAGTTTTCTTCCCAAATCCGTATCCTCACACTTGAAACCAAGCTCAAACCCTA 120
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 CCAAATGGAGTTTTCTTCCCAAATCCGTATCCTCACACTTCAAACCAAGCTCAAACCCTC 180
Query 121 GATCTTCAAAGCCCGACATCGAAAACGCTCCTCCTCAAGATCCAAACATCCATACTCCGA 180
||||||| || ||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 181 GATCTTCCAATCCCGACATCGAAAACGCTCCTCCTCAAAATCCAAACATCCATAATCCGC 240
Query 181 TAAATCAATCTGTTTC---TAAATCACCGGCTTACAAGAATCAGATGGATTCACCCAATC 237
||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||
Sbjct 241 GAAATCAATCTGTTTCTAGTAAATCAACGGCTTACAAGAATCAGATGGATTCTCCCAATT 300
Query 238 GCAGAGGTGAAGTGTCAGCTTCTCGGCGAAGGGCAATAGCGGCAGTGAAAACTC-ACAAT 296
|| || | |||| ||||||||||||| |||||||||| ||||| ||||||||| | |||
Sbjct 301 GCCGAAGCCAAGTTTCAGCTTCTCGGCCAAGGGCAATATCGGCATTGAAAACTCGA-AAT 359
Query 297 GAAGTAGAAGAAGAAGAAGCCTCGAATCCACATGTAAAGGTTGTGGTGAGGATTAAACCT 356
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAAGTAGAAGAAGAAGGAGCCTCGAATCCACATGTAAAGGTTGTGGTGAGGATTAAACCA 419
Query 357 ACAAAGGAGTATTGCTGGAAAGTGAAGAAAGTTTCCAAAGATTCATATTCTGTTAGAGAT 416
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 420 ACAAAGGAGTATTGCTGGAAAGTGAAGAAAGTTTCCAAAGTTTCATATTCTGTTAGAGAT 479
Query 417 CGCCAATTTACATTTGATTCCGTTCTCGACTCCAATCTAAATCAGGACGATGTATTTCAG 476
||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 480 CGCCATTTTACATTTGATTCTGTTCTTGACTCAAATCTAAATCAGGACGATGTATTTCAG 539
Query 477 CAAATAGGTGTTCCTTTGGTTAGGGATGCTTTATCAGGTTACAACACTAGTGTGCTATCA 536
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CAAATTGGTGTTCCTTTGGTTAGGGATGCTTTATCAGGTTACAACACTAGTGTGCTATCA 599
Query 537 TATGGACAGAACGGAAGTGGGAAGACCTACACTATGTGGGGTCCTGCAGGTTCAATGCTT 596
||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 600 TATGGACAGAATGGAAGTGGGAAGACCTACACAATGTGGGGTCCTGCTGGTTCGATGCTT 659
Query 597 GAGGATCCATCTCCTAAAGGCGAGCAAGGACTCGCGCCTCGAATCTTTCAGATGCTGTTT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GAGGATCCATCTCCTAAAGGCGAGCAAGGACTCGCGCCTCGAATCTTTCAGATGCTGTTT 719
Query 657 TCTGAAATCCAGAGAGAGAAGATGAAGTCTGGAGGAAAAGATTTAAACTATCAGTGCCGT 716
||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||
Sbjct 720 TCTGAAATCCAGAGAGAGAAGATCAAGTCTGGAGGAAAAGAAGTAAATTATCAGTGCCGT 779
Query 717 TGTTCTTTTCTTGAGATATACAATGGACAAATTAGTGATTTGATCGAACAAACCCAGAGA 776
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 780 TGTTCTTTTCTTGAGATATACAATGGACAAATCAGTGATTTGATCGATCAAACCCAGAGA 839
Query 777 AACCTTAAGATTAAGGATGATGCAAAGAATGGTATTTACGTTGAGAACTTGACTGAGGAA 836
||||||||||| |||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct 840 AACCTTAAGATAAAGGATGACGCAAAGAATGGTATCTATGTCGAGAACTTGACTGAGGAA 899
Query 837 TACGTAGATAGCTACGAGGATGTAGTTCAGATATTGATGAAGGGCCTTTCAAGCAGAAAA 896
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 900 TACGTAGATAGCTACGAGGATGTAGCTCAGATACTGATGAAGGGCCTTTCAAGCAGAAAA 959
Query 897 GTTGGAGCAACTAGCACAAGTTTTCAAAGTTCTCGATCACACGTCATACTTTCTTTCATT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GTTGGAGCAACTAGCACAAGTTTTCAAAGTTCTCGATCACACGTCATACTTTCTTTCATT 1019
Query 957 GTCGAGTCTTGGAATAAGGGAGCCTCATCAAGATGTTTCAATACTACCAGAACAAGCAGG 1016
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1020 GTCGAGTCTTGGAATAAGGGAGCCTCGTCAAGATGTTTCAATACTACCAGAACAAGTAGG 1079
Query 1017 ATCAACCTTGTTGATCTTACTGGAGCGGGATCAAATGAACGTGATGCTACTAAACATTGT 1076
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1080 ATCAACCTTGTTGATCTTGCTGGAGCGGGAACAAATGAACGTGATGCTACTAAACACTGC 1139
Query 1077 GTGGAGGAAGAGAAGTTCTTGAAGAAGTCTCTGTCGGAGCTCGGCCATGTTGTAAATGCT 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1140 GTGGAGGAAGAGAAGTTCTTGAAGAAGTCTCTGTCGGAGCTCGGCCATGTTGTAAATTCT 1199
Query 1137 CTGGCGAAAAAAGTTCACCCTGGAATATCCGACCGCAGTCTTCATAAAACCTCATGCTTG 1196
|||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1200 CTGGCGGAAAACGTTCACCCTGGAATATCCGACCGCAGTCTTCATAAAACATCATGCTTG 1259
Query 1197 ACGCATTTATTGCAAGAATCTCTTGGTGGAAATTCAAAACTCACTATCCTGTGCAACATT 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 ACGCATTTATTGCAAGAATCTCTTGGTGGAAATTCAAAACTCACTATCCTGTGCAACATT 1319
Query 1257 TTCCCGAGCGACAAAGACACCAAAAGAACAATGAGCACCCTTAGATTTGGTGAACGGGCT 1316
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TTTCCGAGCGACAAAGACACAAAAAGAACAATGAGCACCCTTAGATTTGGTGAACGGGCT 1379
Query 1317 AAAGCCATGGGAAACAAACCAATGATAAATGAGATCTCAGAAGAAGATGTGAATGATTTG 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AAAGCCATGGGAAACAAACCAATGATAAATGAGATCTCAGAAGAAGATGTGAATGATTTG 1439
Query 1377 AGTGACCAGATTCGTCTGCTAAAGGAAGAACTTACAAGAGCCAAAGCCGATGCGTGTCAT 1436
||||||||||||||||||||||||||||||||| ||| || |||||||||||| ||||||
Sbjct 1440 AGTGACCAGATTCGTCTGCTAAAGGAAGAACTTTCAAAAGTCAAAGCCGATGCTTGTCAT 1499
Query 1437 TCTGTTGGGAGTAAAAATGATTATTTCGGAGCAAAGAATGCACGTGAAAGTTTGAATCAA 1496
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TCTGTTGGAAGTAAAAATGATTATTTCGGAGCAAAGAATGCACGTGAAAGTTTGAATCAA 1559
Query 1497 CTAAGAGTTAGTCTTAACCGCTCTTTGATGCTGCCAAAAATTGATAATGACGAGGAAGAG 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 CTAAGAGTTAGTCTTAACCGCTCTTTGATGCTGCCAAAAATTGATAATGACGAGGAAGAG 1619
Query 1557 ATAACGGTTGATGAGGATGATTTTAAGGAACTGCATCAGCAGATCAAGTCCTTGCGTGGT 1616
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1620 ATAACGGTTGATGAGGATGATTTTAAGGAACTGCATCTGCAGATCAAGTCCTTGCGTGGT 1679
Query 1617 TCATTCAACCAGAAACTAAAGAAGCTCCCTGTCAACAGAGAGTCAGTCAGCTCTTCCTTT 1676
||||| |||||||||||||||||| |||||||||||||||| || |||| ||| ||||||
Sbjct 1680 TCATTTAACCAGAAACTAAAGAAGTTCCCTGTCAACAGAGACTCGGTCAACTCATCCTTT 1739
Query 1677 GTAACAGCATTCGGTGAATCAGAGCTAATTGATGATGATGAGATCTTTTCAGAAGCAGTA 1736
||||||||||||||||||||||||||||| |||||||||||||| | |||||||| ||||
Sbjct 1740 GTAACAGCATTCGGTGAATCAGAGCTAATGGATGATGATGAGATATGTTCAGAAGAAGTA 1799
Query 1737 GAAGTTGAGGAGAAAGATTTTGGTGAATCTTTGGAAGAACATGACGACGACAGTGCTGCA 1796
|||||||||||||| |||||||||||||||||||||||||||||| | | |||||||
Sbjct 1800 GAAGTTGAGGAGAATGATTTTGGTGAATCTTTGGAAGAACATGAC-A-G----TGCTGCA 1853
Query 1797 ACAATATATAAATCAAGTGTA-AAATCCAGGATAAAGGAATTTGCATCGGAAAACAGCAT 1855
||| ||| ||||||||||| | |||||||||||| ||||||||| |||||||||||||||
Sbjct 1854 ACAGTATGTAAATCAAGTG-AGAAATCCAGGATAGAGGAATTTGTATCGGAAAACAGCAT 1912
Query 1856 ATCAATCAATCCCTGCCGTCAATCCATTAA-CTTGCAAGAACCAATCCAGTCAGAGTCTC 1914
|||||||| |||||||||||||||| |||| |||||||||||| |||||||||||||| |
Sbjct 1913 ATCAATCAGTCCCTGCCGTCAATCC-TTAATCTTGCAAGAACCCATCCAGTCAGAGTCAC 1971
Query 1915 CTAAATTCAGAGACTCTTTAAGGAAGAGCATAGCTCTTTCTTCATCATGTCTCAGGAATC 1974
||||||||||||| ||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct 1972 CTAAATTCAGAGATTCTCTACGGAAGAGCATAGCTCTTTCTTCGTCATGTCTCAGGAATC 2031
Query 1975 AGAATAGCCTGGCGCAGAGCATAAAATCCACGTGTCTTGCAGAGAGCCAACATATCAGAT 2034
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2032 AGAATAGCTTGGCGAAGAGCATAAAATCCACGTGTTTTGCAGAGAGCCAACATATCAGAT 2091
Query 2035 CATCTTTACGCGGAAGCAAGATATTCACAGGTTCTACAGAATCTCTAGCTGCAAGTCTGC 2094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2092 CATCTTTACGCGGAAGCAAGATATTCACAGGTTCTACAGAATCTCTAGCTGCAAGTCTGC 2151
Query 2095 GCAGAGGCTTGGATATCATTGACAATCCGC-TGAACC-TGGCATCAAAAAGATGCTCAGT 2152
| |||||||||||||| ||||||||||| | |||||| || ||||||| ||||||||||
Sbjct 2152 GGAGAGGCTTGGATATTATTGACAATCC-CATGAACCCTG-CATCAAACCGATGCTCAGT 2209
Query 2153 TTCTTTGTCTTCTGATAACTTGACCATGCAACCTTCAACAGA-GATACTGCTGGATGATA 2211
|||||||||||||||||||||||||||||||||| | ||||| ||| | | || ||
Sbjct 2210 TTCTTTGTCTTCTGATAACTTGACCATGCAACCTCCCACAGATGAT-C-G----AT--TA 2261
Query 2212 AATCTTTAACAGATGATCGACTACCTCTGTCGCCACTCTGTCCTTCCTGCAGAATTTGCA 2271
|| | || ||| | || |||||| | || ||| | ||||||||||
Sbjct 2262 C--CT----C---TG-TCGCC-AC-TCTGTC-CAAC-CTG-C--------AGAATTTGCA 2298
Query 2272 GCTCAAAAATATCAAGTTTAGTTGAGAGAGATGGATATCAGCATATGGAAGGGGTTGTTG 2331
|||| || || ||||| |||||||| ||||||||||||| ||||||||||||| |||
Sbjct 2299 GCTCTAAGTTACCAAGTGTAGTTGAGGGAGATGGATATCA---TATGGAAGGGGTTCTTG 2355
Query 2332 AGAAGCAGCAGGAGCTTGAAAAGTTGTGCACAGAGCAAGCAGCCAAGATTGAACAGCTAA 2391
|||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 2356 AGAAGCAGCAAGAGCTTGAAAAATTGTGCTCAGAGCAAGCAGCCAAGATTGAACAGCTAA 2415
Query 2392 CACGCCTGGTAGAGCAACACAAAATTCAAACTGAGAATGAAACAGAAGAACTTGTGGGAG 2451
| |||||||||| |||||||||| ||||||||||| ||||||||||| ||||| ||||||
Sbjct 2416 CGCGCCTGGTAGGGCAACACAAACTTCAAACTGAGGATGAAACAGAAAAACTTATGGGAG 2475
Query 2452 CAAGTAGTGAAGAACGACTTCCTTCTGCAAATGAAAACCAGCGTGACCAAGCAGAAGTCA 2511
|||||| || |||||||||||||||||||||||||||||||| | | | || | | |
Sbjct 2476 CAAGTAATGGAGAACGACTTCCTTCTGCAAATGAAAACCAGCTTCTC-A-GCTG---T-A 2529
Query 2512 TAACTGAAAAATATGAAGCAAAACAAATCCCCGATGACGACTCTAAAAAGACAGACTTTG 2571
||||||||| |||||| | |||||||||| | ||||| ||||| || |||||||||||||
Sbjct 2530 TAACTGAAACATATGACGTAAAACAAATCTCGGATGATGACTCCAAGAAGACAGACTTTG 2589
Query 2572 ATATTGGCGAGAAGGAGGCATTACTCAAAGAAATTGAAGATCTGAAAAGAAAATTGCAGA 2631
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 2590 ATATTGGCGAGAAGGAGGCATTACTCAAAGAAATTGAGGATCTGAAAAAAAAATTGCAGA 2649
Query 2632 CCCCTGTAACCATGTCCAGCAATGAACTGAGATCATCTCTGTTGGCTCGTTCGTTTCAAC 2691
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2650 CGCCTGTAACCATGTCCACCAATGAACTGAGATCATCTCTGTTGGCTCGTTCGTTTCAAC 2709
Query 2692 TCCGTAACAAGAATGCTGAAAATGATATCGAGGAAGAAAGACTTAGGTGCACAGAAATGG 2751
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2710 TCCGTAGCAAGAATGCTGAAAAAGATATCGAGGAAGAAAGACTTAGGTGCACAGAAATGG 2769
Query 2752 AAAGCGAGTGGATATCATTGACCGACGAACTCAGAGTTGAGATTGAAACTCAACGTACTC 2811
|||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||| |
Sbjct 2770 AAAGCGAGTGGATATCATTGACTGACGAATTCAGAGTAGAGATTGAAACTCAACGTACAC 2829
Query 2812 GCGCAGAGAAAGCTGAAGCACAGCTTAAACAAGAGAAATTATCTTCTGAGGAGTTAGAAG 2871
||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||
Sbjct 2830 GCGCAGAGAAAGCTGAAGCCCAGCTTAAACAAGAGAAACTATCTTCTGAGGAGCTAGAAG 2889
Query 2872 ATGCACTTCGAAGAGCTGTTCTTGGTCATGCCAGGTTTGTTGAACACTACACAGAGCTAC 2931
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2890 ATGCACTTCGCAGAGCTGTTCTTGGTCATGCCAGGTTTGTTGAACACTACACAGAGCTAC 2949
Query 2932 AAGAGAAGTACAACGACTTAGGCTCAAAGCATAAAGCAACAGTGGAATGGATAACAGAGT 2991
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2950 AAGAGAAGTACAACGACTTATGCTCAAAGCATAAAGCAACAGTGGAATGGATAACAGAGT 3009
Query 2992 TGAAGAAGGCAGTAGCAAAGGCTGGTAAAAAGGGTTGCGGTTCTCGTTTCGCTAAATCAC 3051
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3010 TGAAGAAGGCAGTAGCAAAGGCTGGTAAAAAGGGTTGCGGTTCTCGTTTTGCTAAATCAC 3069
Query 3052 TTGCTTCTGAGCTCTCAGCTCTGAGAGTAGAAAGAGAAAGAGAAAGGGATTTGTTAAAGA 3111
||||||||||||||||||| || ||||||||||||||| ||||||| ||| |||| ||||
Sbjct 3070 TTGCTTCTGAGCTCTCAGCACTTAGAGTAGAAAGAGAACGAGAAAGAGATCTGTTGAAGA 3129
Query 3112 AGGAAAACGTAAGTCTCAAGATCCAACTAAGGAATACTGCTGAAGCTGTTCATACTGCTG 3171
|||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3130 AGGAAAACATAAGCCTCAAGATTCAACTAAGGAATACTGCTGAAGCTGTTCATACTGCTG 3189
Query 3172 GAGAAGTTCTTGTTAGACTCAGAGAAGCCGAACAATCAGCATCTGCTGCTGAGgaaaagt 3231
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3190 GAGAAGTTCTTGTTAGACTCAGAGAAGCCGAACAATCAGCATCAGCTGCTGAGGAAAAGT 3249
Query 3232 gcaatgaagtagaagaagaaaacgagaagctaaagaagaaaatggaaaagctaaagagga 3291
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 3250 TCAATGAAGTAGAAGAAGAAAACGAGAAGCTAAAGAAGAAAATGGAAAAGTTGAAGAGGA 3309
Query 3292 gaCACAAGTTGGAAGTGGTAACAATCAAAAAGAGTCTAAAGCAAAACACATTGCCAGAAT 3351
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3310 GACACAAGTTGGAAGTGGTAACAATCAAAAAGAGTCTAAAGCAAAACACGTTGCCAGAAT 3369
Query 3352 CTGCATTGCAGCCACTAAATCAGAGGAACTCAGCTATTGAGGAAG--G-AATGTAGAAA- 3407
|||||||||||||||| ||||||||||||| ||||||||||||| | ||||||||||
Sbjct 3370 CTGCATTGCAGCCACTGCATCAGAGGAACTCGGCTATTGAGGAAGAAGGAATGTAGAAAC 3429
Query 3408 A-CATTATACCAAAGTGC 3424
| ||||||||||||||||
Sbjct 3430 ATCATTATACCAAAGTGC 3447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 170417105371
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5