BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929939
Length=1111
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20160.1 | Symbols: | Terpenoid synthases superfamily prote... 883 0.0
> AT3G20160.1 | Symbols: | Terpenoid synthases superfamily protein
| chr3:7038995-7040029 FORWARD LENGTH=1035
Length=1035
Score = 883 bits (478), Expect = 0.0
Identities = 782/925 (85%), Gaps = 36/925 (4%)
Strand=Plus/Plus
Query 182 AAGCTATGA-ATCAGAGTTCATGTCGTATATGATCCGTAAATCTAAATCGGTCAATGAGG 240
||||||||| | | ||||||||||||||||| || ||| |||| || |||||| | |
Sbjct 132 AAGCTATGATTTTA-AGTTCATGTCGTATATGGTCAATAAGGCTAAGTCCGTCAATAAAG 190
Query 241 TACTAGACGAGGCCGTTCCACTCTGCGAGCCAGTGCTGAAGATCCGTGAGGCCATGAGGT 300
|||||| ||||| ||||| ||| ||||||||| || ||||||||||||||||||||||
Sbjct 191 CACTAGAAGAGGCTGTTCCTCTCCGCGAGCCAGAACTCAAGATCCGTGAGGCCATGAGGT 250
Query 301 ACACACTACTCTCGGGTGGCAAACGCGTAAGGCCAATGCTTTGCTTAGCTGCATGCGAGC 360
|||| || ||||| | ||| || || ||||| ||||||||||||||||||||||||||||
Sbjct 251 ACACGCTTCTCTCCGATGGGAAGCGTGTAAGACCAATGCTTTGCTTAGCTGCATGCGAGC 310
Query 361 TCGTGGGCGGG-CAAGAGTCAACCGCAATG-CCTTG-TGCATGTGCGGTTGAGATGATCC 417
||||||| ||| |||||||||||||||||| || | |||||||||| |||||||| |||
Sbjct 311 TCGTGGG-GGGACAAGAGTCAACCGCAATGTCC--GCTGCATGTGCGATTGAGATGCTCC 367
Query 418 ATGCATCGTCGCTCATCCAAGACGATCTACCTTGTATGGACGACGACAACCTCCGGCGTG 477
| || ||||| ||||||| |||||| || |||||||||||| |||||| |||||| ||||
Sbjct 368 ACGCGTCGTCTCTCATCCTAGACGACCTCCCTTGTATGGACAACGACAGCCTCCGACGTG 427
Query 478 GAAAACCCACGAACCATAAAGTCTTTGGCGAAAACATAGCTATCTTGGCAGT-TGATGCG 536
|||||||||| ||||||| |||||||||||| | ||||| || || || | | | |||
Sbjct 428 GAAAACCCACTAACCATATAGTCTTTGGCGAGAGTATAGCCATATTAGC-TTCTCAAGCG 486
Query 537 CTCATAGCTTTGGCCAT-CAAGCACACCGTGGAATCCACC-TCGTTGGACGTTCCTCCGG 594
|||||||||||||| | ||| | ||| | ||||||| | | ||||||||| || |
Sbjct 487 CTCATAGCTTTGGCTGTCCAA-AAGACCACGTCATCCACCTTTG-CGGACGTTCCCCCAG 544
Query 595 AGAGGGTTCTCCTGGCAATTCTA-GAGATGGCGAGAGCGGTGGGAACGGAAGGACTCGTT 653
||||| ||||| | | ||| | ||||||| | ||| || |||| | || || |||
Sbjct 545 AGAGGATTCTCAAGACCGTTC-AGGAGATGGTTAAAGCAGT-GGAA--G--GG-CTTGTT 597
Query 654 GCGGGTCAAGCA-GCTGATTTGGATGGGGAAGGCAAGAGCTTTGATAATGACACTGGATT 712
|| |||||| || || ||||||| ||| ||||| | ||| ||||||| ||||||||||||
Sbjct 598 GCAGGTCAA-CAGGCGGATTTGGCTGGAGAAGGTATGAGATTTGATAGTGACACTGGATT 656
Query 713 AAAGCATCTTGAGTTTATACATATTCATAAAACGGCGGCGTTGCTTGAAGCGGCGGCTGT 772
| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 657 AGAGCATCTTGAGTTTATACATATTCATAAAACGGCGGCGTTGCTTGAAGCCGCAGCTGT 716
Query 773 TATGGGAGCTATAATGGGAGGTGGGTCAGATGAAGAGATCGAGAGGATTCGAAGTTATGC 832
||||||||||||||||||||||||||| ||||||||||| |||||| |||| ||||| ||
Sbjct 717 TATGGGAGCTATAATGGGAGGTGGGTCTGATGAAGAGATTGAGAGGCTTCGGAGTTACGC 776
Query 833 GAGATGCATTGGGTTGATGTTTCAGGTGGTTGACGATGTGCTTGATGTGACCAAGTCGTC 892
||||| |||||||| ||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 777 AAGATGTATTGGGTTAATGTTTCAGGTTGTGGACGATGTGCTTGATGTGACCAAATCGTC 836
Query 893 GGAAGAGCTAGGGAAAACCGCCGGTAAAGATTTGATCTC-GGAAAAGCTGACGTATCCGA 951
||||||||| ||||||||||||||||||||||||||| | |||||| |||||||||||||
Sbjct 837 GGAAGAGCTCGGGAAAACCGCCGGTAAAGATTTGATCGCCGGAAAA-CTGACGTATCCGA 895
Query 952 -AGGTGATGGGAGTGGAGAAATCGAGAGAATATGCCGAGA-AGTTGAACAGAGAAGCACG 1009
| ||||||||||||||||||||| ||||||||| |||| | ||||||| |||||| ||
Sbjct 896 GAC-TGATGGGAGTGGAGAAATCGAAAGAATATGCTGAGAGA-TTGAACATAGAAGCGCG 953
Query 1010 GGAACATCTTAACATG-TTTGATCCAGACAAGGCTG-CTCCTTTGTTGT-TGCTCGCTGA 1066
|||||||||| | | |||||| |||||||| || |||||||| ||| | ||||||||
Sbjct 954 GGAACATCTTCT-AGGGTTTGATATAGACAAGG-TGGCTCCTTTGGTGTCT-CTCGCTGA 1010
Query 1067 TTACATTGTCAACAGACAAAACTGA 1091
|||||||||||||||||||||||||
Sbjct 1011 TTACATTGTCAACAGACAAAACTGA 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54467591325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5